Factsheet for TraesCS2D01G202700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G037680.2	Barley	cytosol	74.64	98.08
TraesCS2A01G184900.1	Wheat	unclear	95.92	96.48
TraesCS2B01G222400.2	Wheat	plastid	92.13	92.13
Os07t0573800-02	Rice	plastid	78.43	78.66
EER99589	Sorghum	plastid	74.93	75.15
Zm00001d021881_P001	Maize	plastid	57.43	69.12
VIT_08s0007g07350.t01	Wine grape	cytosol	51.9	64.49
GSMUA_Achr5P14810_001	Banana	plastid	61.22	63.06
KRH06700	Soybean	mitochondrion	55.98	58.9
KRG94835	Soybean	mitochondrion	55.39	58.28
PGSC0003DMT400083485	Potato	mitochondrion, plastid	53.94	57.63
Solyc03g063240.2.1	Tomato	plastid	53.35	57.01
AT3G03890.1	Thale cress	plastid	51.31	54.83
CDY50859	Canola	plastid	51.31	54.83
Bra031966.1-P	Field mustard	plastid	51.31	54.83
CDY64899	Canola	plastid	51.02	54.35
TraesCS7D01G252700.2	Wheat	plastid	17.78	17.09

Protein Annotations

Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	InterPro:DUF2470	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	PFAM:PF10615	PFAM:PF13883
PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	SUPFAM:SSF50475	InterPro:Split_barrel_FMN-bd	EnsemblPlantsGene:TraesCS2D01G202700	EnsemblPlants:TraesCS2D01G202700.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:155117185..155122735

Molecular Weight (calculated)

36906.9 Da

IEP (calculated)

9.052

GRAVY (calculated)

-0.202

Length

343 amino acids

Sequence
(BLAST)

001: MRPFLLTPVG AQLASLPSPS TLSRLLRPLH LQNRHAHAIP APTSSSSSSP LLHPPRRSTS RRGDRFLASS SPSQMAAPAD APGGSADAFE VIRAHQVKAA
101: RLPPVEEIRT ILDQSVRGVL ATHSQEHVGY PSGSMVDFAC DQDGSPILAV SSLAVHSKNL AGSTKCSLLV AKDPEDRTDT VITVYGDATP VPDEEKDAVK
201: TAYLRRHPEA FWVDFGDFRF LHIKPKAVRY VSGVATAILG SGEFSAAEFK EAKVDPISQF SAPIAGHMNK DHADDTKLIV QHSTSVKVDF ASILDVDSLG
301: INVKAGYDGT VLKLRIPFPR RAQDRKDVKT LIVEMLQAAK ASS

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.