Factsheet for Zm00001d021881_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99589	Sorghum	plastid	89.47	74.56
HORVU2Hr1G037680.2	Barley	cytosol	60.7	66.28
Os07t0573800-02	Rice	plastid	70.88	59.06
TraesCS2B01G222400.2	Wheat	plastid	69.82	58.02
TraesCS2A01G184900.1	Wheat	unclear	68.77	57.48
TraesCS2D01G202700.1	Wheat	plastid	69.12	57.43
VIT_08s0007g07350.t01	Wine grape	cytosol	49.82	51.45
GSMUA_Achr5P14810_001	Banana	plastid	59.65	51.05
KRH06700	Soybean	mitochondrion	52.98	46.32
Bra031966.1-P	Field mustard	plastid	51.23	45.48
KRG94835	Soybean	mitochondrion	51.93	45.4
CDY50859	Canola	plastid	50.53	44.86
CDY64899	Canola	plastid	50.53	44.72
PGSC0003DMT400083485	Potato	mitochondrion, plastid	49.82	44.24
Solyc03g063240.2.1	Tomato	plastid	49.82	44.24
AT3G03890.1	Thale cress	plastid	49.82	44.24
Zm00001d031540_P002	Maize	plastid	19.65	15.43
Zm00001d015274_P001	Maize	plastid	20.35	14.61
Zm00001d037710_P001	Maize	cytosol	4.91	11.02

Protein Annotations

KEGG:00750+1.4.3.5	Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	UniProt:A0A1D6IHH5	InterPro:DUF2470
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119
ProteinID:ONM58953.1	PFAM:PF01243	PFAM:PF10615	PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	InterPro:Pyridox_Oxase_put
SUPFAM:SSF50475	InterPro:Split_barrel_FMN-bd	UniParc:UPI00022210B4	EnsemblPlantsGene:Zm00001d021881	EnsemblPlants:Zm00001d021881_P001	EnsemblPlants:Zm00001d021881_T001
SEG:seg	:	:	:	:	:

Description

Root border cell-specific protein

Coordinates

chr7:-:165331892..165337693

Molecular Weight (calculated)

31076.8 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.286

Length

285 amino acids

Sequence
(BLAST)

001: MPFLLTPGAR AVPSPSTLSR LLLPLHLQIT NGRHNHQHGH VPASPLLYPR LRNRRSRFFA ASSSSSSPQM AAPADAAGGS SDAFEVIRVH QAKAVRLSPV
101: EEIRTIMDRS VRCVLATHSQ DHAGYPSGSM VDFACDQDGY PILAVSSLAV HSKNLSGNPK CSLLVAKDPE DRTDTVITVY GDAVPVSDEE KDSVRSAYLR
201: RHPDAFWVDF GDFSFLHIKP KAVRYVSGVA TALLGSGEFN VAEYKEAKVD PISQFSTPIT SHMNKDHAND TKLIVQHSTT VKARK

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.