Factsheet for PGSC0003DMT400083485

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g063240.2.1	Tomato	plastid	95.95	95.95
HORVU2Hr1G037680.2	Barley	cytosol	56.07	68.97
VIT_08s0007g07350.t01	Wine grape	cytosol	58.88	68.48
KRG94835	Soybean	mitochondrion	63.86	62.88
KRH06700	Soybean	mitochondrion	63.55	62.58
AT3G03890.1	Thale cress	plastid	61.37	61.37
Bra031966.1-P	Field mustard	plastid	60.12	60.12
CDY50859	Canola	plastid	59.81	59.81
CDY64899	Canola	plastid	58.88	58.7
GSMUA_Achr5P14810_001	Banana	plastid	58.26	56.16
Os07t0573800-02	Rice	plastid	59.19	55.56
EER99589	Sorghum	plastid	58.26	54.68
TraesCS2A01G184900.1	Wheat	unclear	57.63	54.25
TraesCS2B01G222400.2	Wheat	plastid	57.94	54.23
TraesCS2D01G202700.1	Wheat	plastid	57.63	53.94
Zm00001d021881_P001	Maize	plastid	44.24	49.82
PGSC0003DMT400068174	Potato	plastid	21.18	16.79
PGSC0003DMT400068172	Potato	cytosol, mitochondrion, peroxisome	6.85	16.18

Protein Annotations

Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	ProteinID:ABB72799	ProteinID:ABB72799.1	EMBL:DQ268840
InterPro:DUF2470	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349
InterPro:IPR037119	UniProt:M1D6Y6	PFAM:PF10615	PFAM:PF13883	EnsemblPlantsGene:PGSC0003DMG400033345	PGSC:PGSC0003DMG400033345
EnsemblPlants:PGSC0003DMT400083485	PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	SUPFAM:SSF50475	InterPro:Split_barrel_FMN-bd	UniParc:UPI0002966ADB
SEG:seg	:	:	:	:	:

Description

Root border cell-specific protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033345]

Coordinates

chr3:+:23453525..23462475

Molecular Weight (calculated)

35944.0 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.165

Length

321 amino acids

Sequence
(BLAST)

001: MKTLVLAPSP LRTFSPFSRF LYPNLNNNAT HNYLLSPSPS KSFSSLTSIR PLLAMASQNV SSGDEVDIFQ LIQAHQEKAA RLSPIEDVRT LLHYSLRGVL
101: STFSQKYEGY PSASMVDFAC DTYGSPILAV SNLAVHTKDL LATSRCSLLV ARDPEDRTDL VITVHGDAVP VPETEKEGIR ATYLARHPKA FWVDFGDFQF
201: MRIEPRIVRY VSGVATAILG SGEFSKEEFR TAKVDPIYQF SKPITSHMNK DHTEDTKLIV QHSTSVPVDF AYMLDVDSLG FNVKACYKDT DFKLRVPFPR
301: RAVDRKDVKA LIVEMLQAAR T

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.