CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94835	Soybean	mitochondrion	92.64	92.64
HORVU2Hr1G037680.2	Barley	cytosol	57.67	72.03
VIT_08s0007g07350.t01	Wine grape	cytosol	59.51	70.29
PGSC0003DMT400083485	Potato	mitochondrion, plastid	62.58	63.55
Bra031966.1-P	Field mustard	plastid	62.27	63.24
CDY50859	Canola	plastid	61.96	62.93
AT3G03890.1	Thale cress	plastid	61.66	62.62
CDY64899	Canola	plastid	61.66	62.42
Solyc03g063240.2.1	Tomato	plastid	61.35	62.31
GSMUA_Achr5P14810_001	Banana	plastid	61.04	59.76
Os07t0573800-02	Rice	plastid	59.2	56.43
TraesCS2A01G184900.1	Wheat	unclear	58.9	56.3
TraesCS2B01G222400.2	Wheat	plastid	59.2	56.27
TraesCS2D01G202700.1	Wheat	plastid	58.9	55.98
EER99589	Sorghum	plastid	58.28	55.56
Zm00001d021881_P001	Maize	plastid	46.32	52.98
KRH44611	Soybean	nucleus	22.09	18.65
KRH47293	Soybean	nucleus	21.47	18.37

Protein Annotations

Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	UniProt:A0A0R0FL69	EMBL:ACUP02009864	InterPro:DUF2470
EnsemblPlantsGene:GLYMA_16G040700	GO:GO:0003674	GO:GO:0005488	GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349
InterPro:IPR037119	EnsemblPlants:KRH06700	ProteinID:KRH06700	ProteinID:KRH06700.1	PFAM:PF10615	PFAM:PF13883
PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	SUPFAM:SSF50475	InterPro:Split_barrel_FMN-bd	UniParc:UPI0006ED8862	SEG:seg

Description

hypothetical protein

Coordinates

chr16:-:3825551..3830340

Molecular Weight (calculated)

35967.8 Da

IEP (calculated)

6.964

GRAVY (calculated)

-0.213

Length

326 amino acids

Sequence
(BLAST)

001: MVTPLTRVLP FRHPNGYNTL PFSLTRYPSS PNFSFSFSPL TLTLSMAASP QSSAPTVSPG DANINKDGVF QLIQAHQEKA ARLPPVEEIR TVLDRSVRGM
101: LSTFSKKFDG YPSGSMVDFA CDSNGYPILA VSDLAVHSKD LTANPKCSLL VARDPEDRTD LVITVHGDAI SVPENEREAV RAAYLARHPN AFWVDFGDFR
201: FLRIEPKVVR FVSGVATALL GSGEFSGDEY KSAKVDPIAQ FSKPVASHMN KDHAEDNKVI VQHWTSVPVL DFADILDLDS LGFNVKAGYQ GDTFKLRVPF
301: PRRAEDRKDV KTLIVEMLQA ARPKVD

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.