Factsheet for VIT_08s0007g07350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G037680.2	Barley	cytosol	63.77	67.43
Bra031966.1-P	Field mustard	plastid	73.55	63.24
CDY50859	Canola	plastid	73.19	62.93
AT3G03890.1	Thale cress	plastid	73.19	62.93
CDY64899	Canola	plastid	71.01	60.87
KRG94835	Soybean	mitochondrion	71.01	60.12
KRH06700	Soybean	mitochondrion	70.29	59.51
PGSC0003DMT400083485	Potato	mitochondrion, plastid	68.48	58.88
Solyc03g063240.2.1	Tomato	plastid	67.03	57.63
GSMUA_Achr5P14810_001	Banana	plastid	67.03	55.56
EER99589	Sorghum	plastid	65.22	52.63
TraesCS2A01G184900.1	Wheat	unclear	64.86	52.49
Os07t0573800-02	Rice	plastid	64.86	52.34
TraesCS2B01G222400.2	Wheat	plastid	64.86	52.19
TraesCS2D01G202700.1	Wheat	plastid	64.49	51.9
Zm00001d021881_P001	Maize	plastid	51.45	49.82
VIT_09s0054g00600.t01	Wine grape	plastid	23.55	16.41

Protein Annotations

EntrezGene:100243555	wikigene:100243555	Gene3D:2.30.110.10	Gene3D:3.20.180.10	MapMan:35.2	ProteinID:CCB55201
ProteinID:CCB55201.1	InterPro:DUF2470	UniProt:F6HLB8	EMBL:FN595991	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0048037	InterPro:Haem_oxidase_HugZ-like_sf	InterPro:IPR012349	InterPro:IPR037119	EntrezGene:LOC100243555	wikigene:LOC100243555
PFAM:PF10615	PFAM:PF13883	PANTHER:PTHR13343	PANTHER:PTHR13343:SF4	SUPFAM:SSF50475	InterPro:Split_barrel_FMN-bd
TIGR:TC53900	UniParc:UPI0002107FA6	ArrayExpress:VIT_08s0007g07350	EnsemblPlantsGene:VIT_08s0007g07350	EnsemblPlants:VIT_08s0007g07350.t01	unigene:Vvi.1697
RefSeq:XP_002276799	RefSeq:XP_002276799.1	:	:	:	:

Description

No Description!

Coordinates

chr8:-:20923576..20929942

Molecular Weight (calculated)

30511.3 Da

IEP (calculated)

5.863

GRAVY (calculated)

-0.246

Length

276 amino acids

Sequence
(BLAST)

001: MAASAAQTAS PGDVTTDAEV FQLIKDHQEK AARLPPLEEI RTVINHSVRG MLSTISQKYE GYPSGSMVDF ACDQDGYPIL AVSSLANHTK DLLANTKCSL
101: LVAKDPEDKT DLLITVHGDA VPVSEEDKGD IRTAYLTRHP NAFWVDFGDF QFMRIEPKVV RYVSGIATAL LGSEEFTKEA YTAAKVDPIA QFSKPVASHM
201: NRDHAEDTKL IVQHVTSILV DSAYMLDLDS LGFYVKATYR GNAFKLRIPF PRRAEDRKDV KTLVVEMLQA AKSQSN

Best Arabidopsis Sequence Match ( AT3G03890.1 )
(BLAST)

001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N

Arabidopsis Description

AT3G03890 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDU1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.