Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G009910.2 | Barley | plastid | 96.18 | 95.94 |
| TraesCS5D01G039000.1 | Wheat | plastid | 96.95 | 94.07 |
| Zm00001d000227_P001 | Maize | cytosol | 75.57 | 93.1 |
| TraesCS5A01G030800.1 | Wheat | plastid | 92.11 | 92.58 |
| CDX90227 | Canola | cytosol, mitochondrion, peroxisome | 42.24 | 89.25 |
| Bra032361.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 66.92 | 85.67 |
| EES16391 | Sorghum | plastid | 82.7 | 81.45 |
| Os12t0616900-01 | Rice | plastid | 79.39 | 79.8 |
| TraesCS5B01G376400.1 | Wheat | plastid | 79.39 | 79.39 |
| VIT_10s0003g03770.t01 | Wine grape | plastid | 72.01 | 72.38 |
| KRH05520 | Soybean | plastid | 72.77 | 70.97 |
| KRH15497 | Soybean | plastid | 72.77 | 70.62 |
| CDY63670 | Canola | plastid | 72.26 | 70.47 |
| Bra010796.1-P | Field mustard | plastid | 72.26 | 70.47 |
| KRH42550 | Soybean | plastid | 72.77 | 70.44 |
| KRH58644 | Soybean | nucleus | 72.52 | 70.37 |
| Solyc04g008590.2.1 | Tomato | plastid | 73.03 | 70.34 |
| AT2G34590.1 | Thale cress | plastid | 72.52 | 70.2 |
| Solyc08g016750.2.1 | Tomato | plastid | 72.77 | 70.1 |
| CDY51472 | Canola | plastid | 64.89 | 69.86 |
| AT1G30120.1 | Thale cress | plastid | 72.01 | 69.7 |
| VIT_04s0043g00720.t01 | Wine grape | plastid | 71.76 | 69.63 |
| CDY54115 | Canola | mitochondrion, peroxisome, plastid | 10.69 | 68.85 |
| PGSC0003DMT400019358 | Potato | plastid | 73.03 | 68.82 |
| GSMUA_Achr5P02560_001 | Banana | plastid | 64.89 | 68.73 |
| GSMUA_Achr4P31470_001 | Banana | mitochondrion | 45.55 | 68.58 |
| GSMUA_Achr2P12960_001 | Banana | vacuole | 10.43 | 66.13 |
| PGSC0003DMT400080554 | Potato | plastid | 71.5 | 64.45 |
| CDY26291 | Canola | plastid | 50.89 | 63.49 |
| CDY54117 | Canola | cytosol | 18.58 | 62.93 |
| CDY54116 | Canola | cytosol | 4.07 | 40.0 |
| TraesCS7B01G161100.1 | Wheat | mitochondrion | 34.61 | 36.86 |
| TraesCS5B01G290600.1 | Wheat | mitochondrion | 34.86 | 36.44 |
| CDX90228 | Canola | plastid | 12.21 | 36.09 |
| TraesCS6B01G050600.1 | Wheat | mitochondrion | 22.14 | 31.07 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G030400.1 | EnsemblPlantsGene:TraesCS5B01G030400 | Gene3D:3.40.50.920 | Gene3D:3.40.50.970 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:IPR009014 | InterPro:THDP-binding | InterPro:Transketo_C/PFOR_II | InterPro:Transketolase-like_Pyr-bd |
| InterPro:Transketolase_C | PANTHER:PTHR11624 | PANTHER:PTHR11624:SF93 | PFAM:PF02779 | PFAM:PF02780 | SEG:seg |
| SMART:SM00861 | SUPFAM:SSF52518 | SUPFAM:SSF52922 | TIGR:cd07036 | MapMan:5.1.2.2.1.2 | : |
Description
No Description!
Coordinates
chr5B:+:33625595..33628829
Molecular Weight (calculated)
42201.2 Da
IEP (calculated)
6.402
GRAVY (calculated)
0.020
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAPSPQAT AAVAALSRHR SGAVPPVPRS ARVAAAARRP AGSTRARGGL VARAAVAAKG EVASSDTGGH EVLMFEALRE AMIEEMTLDP TVCMIGEDVG
101: DYGGSYKVSK GLSEMFGDLR VLDTPIAENS FTGMGIGAAM KGLRPVVEGM NMGFLLLAYN QISNNCGMLP YTSGGQFKIP IVIRGPGGVG RQLGAEHSQR
201: LESYFQSIPG IQMVACSTPY NAKGLLKAAI RSDNPVVLFE HVLLYNLKEK IPDEEYICCL EEAEMVRPGS QLTILTYSRM RYHVMQAVKT LVNKGYDPEV
301: IDIRSLKPFD LHTIGNSIKK THRVLIVEEC MRTGGIGASL RSAIIDNFWD ELDARPVCLS SQDVPTPYAA TLEDATVVQP AQIVAAVEEI CQS
101: DYGGSYKVSK GLSEMFGDLR VLDTPIAENS FTGMGIGAAM KGLRPVVEGM NMGFLLLAYN QISNNCGMLP YTSGGQFKIP IVIRGPGGVG RQLGAEHSQR
201: LESYFQSIPG IQMVACSTPY NAKGLLKAAI RSDNPVVLFE HVLLYNLKEK IPDEEYICCL EEAEMVRPGS QLTILTYSRM RYHVMQAVKT LVNKGYDPEV
301: IDIRSLKPFD LHTIGNSIKK THRVLIVEEC MRTGGIGASL RSAIIDNFWD ELDARPVCLS SQDVPTPYAA TLEDATVVQP AQIVAAVEEI CQS
001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Arabidopsis Description
PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.