CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH39044
KRH42544
KRH44611
KRH47293
KRH54542
KRH56919
KRH58636
KRH63357
KRH69557
KRH74610

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	KRH42544	AT1G14920.1	21798944
AT1G30120.1	KRH58636	AT1G14920.1	21798944
AT1G30120.1	KRH69557	AT1G70340.1	21798944
AT1G30120.1	KRH74610	AT1G70340.1	21798944
AT1G30120.1	KRH39044	AT3G17860.1	21798944
AT1G30120.1	KRH44611	AT3G21140.1	21798944
AT1G30120.1	KRH47293	AT3G21140.1	21798944
AT1G30120.1	KRH03466	AT3G47620.1	21798944
AT1G30120.1	KRH54542	AT3G47620.1	21798944
AT1G30120.1	KRH56919	AT3G47620.1	21798944
AT1G30120.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	43.46	94.62
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	71.36	94.14
Zm00001d000227_P001	Maize	cytosol	70.86	89.97
Os03t0645100-01	Rice	plastid	72.1	89.3
CDY54115	Canola	mitochondrion, peroxisome, plastid	12.84	85.25
KRH05520	Soybean	plastid	84.69	85.11
KRH42550	Soybean	plastid	84.44	84.24
VIT_10s0003g03770.t01	Wine grape	plastid	79.75	82.61
KRH58644	Soybean	nucleus	81.73	81.73
VIT_04s0043g00720.t01	Wine grape	plastid	80.49	80.49
Solyc08g016750.2.1	Tomato	plastid	79.01	78.43
Solyc04g008590.2.1	Tomato	plastid	79.01	78.43
Zm00001d033225_P002	Maize	plastid	74.07	78.33
AT2G34590.1	Thale cress	plastid	78.27	78.08
AT1G30120.1	Thale cress	plastid	78.27	78.08
CDY63670	Canola	plastid	77.53	77.92
EER93752	Sorghum	plastid	74.32	77.78
TraesCS5D01G384100.1	Wheat	golgi	75.31	77.61
Bra010796.1-P	Field mustard	plastid	77.04	77.42
TraesCS5A01G374500.1	Wheat	plastid	75.06	77.35
TraesCS5B01G376400.1	Wheat	plastid	74.81	77.1
PGSC0003DMT400019358	Potato	plastid	79.26	76.98
Os12t0616900-01	Rice	plastid	73.09	75.7
CDY51472	Canola	plastid	68.15	75.62
EES16391	Sorghum	plastid	74.32	75.44
PGSC0003DMT400080554	Potato	plastid	80.99	75.23
GSMUA_Achr5P02560_001	Banana	plastid	68.89	75.2
TraesCS5B01G030400.1	Wheat	plastid	70.62	72.77
TraesCS5A01G030800.1	Wheat	plastid	70.12	72.63
HORVU0Hr1G009910.2	Barley	plastid	69.88	71.83
GSMUA_Achr4P31470_001	Banana	mitochondrion	46.17	71.65
TraesCS5D01G039000.1	Wheat	plastid	71.11	71.11
GSMUA_Achr2P12960_001	Banana	vacuole	10.86	70.97
CDY54117	Canola	cytosol	20.25	70.69
CDY26291	Canola	plastid	53.58	68.89
HORVU5Hr1G092920.4	Barley	plastid	72.84	63.44
CDY54116	Canola	cytosol	4.44	45.0
CDX90228	Canola	plastid	13.33	40.6
KRH14338	Soybean	mitochondrion	35.56	40.0
KRH73802	Soybean	mitochondrion	35.56	40.0
KRH16935	Soybean	mitochondrion	35.06	39.44
KRH65916	Soybean	mitochondrion	28.15	31.84
KRH75712	Soybean	mitochondrion	26.91	30.62

Protein Annotations

EntrezGene:100811513	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	EMBL:ACUP02008608	EnsemblPlantsGene:GLYMA_14G092100
GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0008150	GO:GO:0008152	UniProt:I1M8Z1
InterPro:IPR009014	EnsemblPlants:KRH15497	ProteinID:KRH15497	ProteinID:KRH15497.1	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI000233B9A2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr14:-:8541018..8544667

Molecular Weight (calculated)

44141.4 Da

IEP (calculated)

6.700

GRAVY (calculated)

-0.080

Length

405 amino acids

Sequence
(BLAST)

001: MPMATTHFQG LGVVTPSFSS SHSNKFLLSS RSERKDGIFM VRSDAARVLK TEGRKHELLV TNAVATKGGA SSAASTSKSG SGHELLLFEA LREGLEEEME
101: RDPCVCVMGE DVGHYGGSYK VTKGLAPKFG DLRVLDTPIA ENAFTGMGIG AAMTGLRPVV EGMNMGFLLL AFNQISNNCG MLHYTSGGQF KIPIVIRGPG
201: GVGRQLGAEH SQRLESYFQS IPGIQMVACS TPYNAKGLMK AAIRSENPVI LFEHVLLYNL KERIPDEEYV LSLEEAEMVR PGEHVTILTY SRMRYHVMQA
301: AKTLVNKGYD PEVIDIRSLK PFDLHTIGNS VKKTHRVLIV EECMRTGGIG ASLTAAITEN FHDYLDAPIV CLSSQDVPTP YAGTLEEWTV VQPAQIVTAV
401: EKLCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.