Factsheet for VIT_10s0003g03770.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05260.t01
VIT_01s0026g00030.t01
VIT_09s0054g00600.t01
VIT_17s0000g02230.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	VIT_01s0011g05260.t01	AT1G14920.1	21798944
AT1G30120.1	VIT_01s0026g00030.t01	AT1G70340.1	21798944
AT1G30120.1	VIT_17s0000g02230.t01	AT3G17860.1	21798944
AT1G30120.1	VIT_09s0054g00600.t01	AT3G21140.1	21798944
AT1G30120.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	45.52	95.7
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	73.91	94.14
Zm00001d000227_P001	Maize	cytosol	72.89	89.34
Os03t0645100-01	Rice	plastid	73.66	88.07
CDY54115	Canola	mitochondrion, peroxisome, plastid	13.55	86.89
VIT_04s0043g00720.t01	Wine grape	plastid	88.24	85.19
KRH42550	Soybean	plastid	83.89	80.79
KRH58644	Soybean	nucleus	82.61	79.75
KRH15497	Soybean	plastid	82.61	79.75
Bra010796.1-P	Field mustard	plastid	81.07	78.66
CDY63670	Canola	plastid	80.82	78.41
KRH05520	Soybean	plastid	80.82	78.41
AT1G30120.1	Thale cress	plastid	81.33	78.33
Zm00001d033225_P002	Maize	plastid	76.21	77.81
AT2G34590.1	Thale cress	plastid	80.56	77.59
EER93752	Sorghum	plastid	76.47	77.26
CDY51472	Canola	plastid	72.12	77.26
TraesCS5A01G374500.1	Wheat	plastid	76.47	76.08
TraesCS5D01G384100.1	Wheat	golgi	76.47	76.08
Os12t0616900-01	Rice	plastid	75.96	75.96
TraesCS5B01G376400.1	Wheat	plastid	76.21	75.83
EES16391	Sorghum	plastid	77.24	75.69
GSMUA_Achr5P02560_001	Banana	plastid	71.61	75.47
GSMUA_Achr4P31470_001	Banana	mitochondrion	49.36	73.95
GSMUA_Achr2P12960_001	Banana	vacuole	11.51	72.58
CDY54117	Canola	cytosol	21.48	72.41
TraesCS5A01G030800.1	Wheat	plastid	72.38	72.38
HORVU0Hr1G009910.2	Barley	plastid	72.89	72.33
TraesCS5B01G030400.1	Wheat	plastid	72.38	72.01
TraesCS5D01G039000.1	Wheat	plastid	72.38	69.88
CDY26291	Canola	plastid	55.24	68.57
HORVU5Hr1G092920.4	Barley	plastid	76.73	64.52
CDY54116	Canola	cytosol	4.6	45.0
CDX90228	Canola	plastid	14.83	43.61
VIT_01s0146g00310.t01	Wine grape	mitochondrion	36.06	38.42
VIT_17s0000g00690.t01	Wine grape	mitochondrion	35.04	38.27
VIT_06s0004g00190.t01	Wine grape	mitochondrion	28.13	30.73
VIT_04s0008g02300.t01	Wine grape	mitochondrion	9.46	28.03

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	ProteinID:CCB55805	ProteinID:CCB55805.1	UniProt:F6HLT1
EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0002109350
ArrayExpress:VIT_10s0003g03770	EnsemblPlantsGene:VIT_10s0003g03770	EnsemblPlants:VIT_10s0003g03770.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:6428083..6433750

Molecular Weight (calculated)

42474.5 Da

IEP (calculated)

6.787

GRAVY (calculated)

-0.004

Length

391 amino acids

Sequence
(BLAST)

001: MAAIFQGIGA AAALPSAKKF HSQSRRFVSA RKGSLFVVRS DGRPSLVLPR GAAAKADASA TSTASKPGHE LLLFEALREG LEEEMDRDPL VCVMGEDVGH
101: YGGSYKVTKG LAAKYGDLRV LDTPIAENSF TGMGIGAAMT GLRPIIEGMN MGFLLLAFNQ ISNNCGMLHY TSGGQFKIPV VIRGPGGVGR QLGAEHSQRL
201: ESYFQSIPGI QMVACSTPYN AKGLMKAAIR SENPVILFEH VLLYNLKERI PDDEYVLSLE EAEMVRPGEH VTILTYSRMR YHVMQAAKTL VNKGYDPEVI
301: DIRSLKPFDL YTIGNSVKKT HRVLIVEECM RTGGIGASLT AAITENFIDY LDAPIVCLSS QDVPTPYAGT LEEWTVVQPA QIVTAVEQLC Q

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.