Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90228 | Canola | plastid | 40.52 | 35.34 |
| CDY26291 | Canola | plastid | 68.1 | 25.08 |
| CDY51472 | Canola | plastid | 73.28 | 23.29 |
| Os03t0645100-01 | Rice | plastid | 65.52 | 23.24 |
| Zm00001d000227_P001 | Maize | cytosol | 62.93 | 22.88 |
| GSMUA_Achr5P02560_001 | Banana | plastid | 71.55 | 22.37 |
| AT2G34590.1 | Thale cress | plastid | 77.59 | 22.17 |
| VIT_10s0003g03770.t01 | Wine grape | plastid | 72.41 | 21.48 |
| CDY63670 | Canola | plastid | 74.14 | 21.34 |
| Solyc04g008590.2.1 | Tomato | plastid | 72.41 | 20.59 |
| Zm00001d033225_P002 | Maize | plastid | 67.24 | 20.37 |
| KRH05520 | Soybean | plastid | 70.69 | 20.35 |
| Solyc08g016750.2.1 | Tomato | plastid | 71.55 | 20.34 |
| KRH58644 | Soybean | nucleus | 70.69 | 20.25 |
| KRH15497 | Soybean | plastid | 70.69 | 20.25 |
| PGSC0003DMT400019358 | Potato | plastid | 72.41 | 20.14 |
| EES16391 | Sorghum | plastid | 68.97 | 20.05 |
| KRH42550 | Soybean | plastid | 69.83 | 19.95 |
| EER93752 | Sorghum | plastid | 65.52 | 19.64 |
| Os12t0616900-01 | Rice | plastid | 64.66 | 19.18 |
| TraesCS5A01G374500.1 | Wheat | plastid | 64.66 | 19.08 |
| TraesCS5B01G376400.1 | Wheat | plastid | 64.66 | 19.08 |
| TraesCS5D01G384100.1 | Wheat | golgi | 64.66 | 19.08 |
| HORVU0Hr1G009910.2 | Barley | plastid | 63.79 | 18.78 |
| TraesCS5B01G030400.1 | Wheat | plastid | 62.93 | 18.58 |
| TraesCS5A01G030800.1 | Wheat | plastid | 62.07 | 18.41 |
| PGSC0003DMT400080554 | Potato | plastid | 68.97 | 18.35 |
| CDX90227 | Canola | cytosol, mitochondrion, peroxisome | 29.31 | 18.28 |
| TraesCS5D01G039000.1 | Wheat | plastid | 62.07 | 17.78 |
| HORVU5Hr1G092920.4 | Barley | plastid | 66.38 | 16.56 |
| GSMUA_Achr4P31470_001 | Banana | mitochondrion | 34.48 | 15.33 |
| CDY05827 | Canola | mitochondrion | 39.66 | 12.64 |
| CDX71636 | Canola | mitochondrion | 39.66 | 12.64 |
| CDX84881 | Canola | mitochondrion | 39.66 | 12.53 |
| CDY16348 | Canola | mitochondrion | 38.79 | 12.3 |
| CDX91560 | Canola | mitochondrion | 38.79 | 12.3 |
| CDY45814 | Canola | mitochondrion | 38.79 | 12.26 |
| CDY10556 | Canola | mitochondrion | 31.9 | 10.22 |
| CDY02436 | Canola | mitochondrion | 30.17 | 8.93 |
| CDY54115 | Canola | mitochondrion, peroxisome, plastid | 0.0 | 0.0 |
| CDY54116 | Canola | cytosol | 0.0 | 0.0 |
| GSMUA_Achr2P12960_001 | Banana | vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY54117 | EnsemblPlantsGene:GSBRNA2T00013398001 | Gene3D:3.40.50.970 | InterPro:THDP-binding | InterPro:Transketolase-like_Pyr-bd | PANTHER:PTHR11624 |
| PANTHER:PTHR11624:SF95 | PFAM:PF02779 | ProteinID:CDY54117 | ProteinID:CDY54117.1 | SEG:seg | SUPFAM:SSF52518 |
| UniParc:UPI0004EE33D8 | UniProt:A0A078IVT0 | MapMan:35.1 | : | : | : |
Description
BnaC04g53960DPyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078IVT0]
Coordinates
chrLK033279:-:66961..67503
Molecular Weight (calculated)
12589.0 Da
IEP (calculated)
6.341
GRAVY (calculated)
-0.233
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPATSSTSS NSTHELLLFE ALQEVLEEEI DRDPHVCLMG KDVGHYGGSY KVTKGLAEKF GDLRPSTKSP TTVACFTTHP VGQFTIPVVI RGPGGVGRQL
101: GAEHSQRLES YFQSIL
101: GAEHSQRLES YFQSIL
001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Arabidopsis Description
PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.