Factsheet for Os03t0645100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
YLoc:	cytosol

plastid: 17189339
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0108800-01
Os02t0148400-01
Os02t0747400-01
Os03t0707600-01
Os06t0226700-01
Os08t0428400-01
Os08t0517500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	Os03t0707600-01	AT1G14920.1	21798944
AT1G30120.1	Os01t0108800-01	AT1G70340.1	21798944
AT1G30120.1	Os08t0428400-01	AT3G17860.1	21798944
AT1G30120.1	Os02t0148400-01	AT3G21140.1	21798944
AT1G30120.1	Os08t0517500-01	AT3G21140.1	21798944
AT1G30120.1	Os02t0747400-01	AT3G47620.1	21798944
AT1G30120.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	51.68	90.86
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	83.18	88.6
EER93752	Sorghum	plastid	96.94	81.91
Zm00001d033225_P002	Maize	plastid	95.41	81.46
Os12t0616900-01	Rice	plastid	97.25	81.33
TraesCS5D01G384100.1	Wheat	golgi	96.02	79.9
TraesCS5A01G374500.1	Wheat	plastid	96.02	79.9
TraesCS5B01G376400.1	Wheat	plastid	95.72	79.64
CDY54115	Canola	mitochondrion, peroxisome, plastid	13.76	73.77
VIT_10s0003g03770.t01	Wine grape	plastid	88.07	73.66
KRH58644	Soybean	nucleus	89.91	72.59
KRH42550	Soybean	plastid	89.91	72.41
KRH05520	Soybean	plastid	88.99	72.21
KRH15497	Soybean	plastid	89.3	72.1
GSMUA_Achr5P02560_001	Banana	plastid	81.04	71.43
VIT_04s0043g00720.t01	Wine grape	plastid	88.07	71.11
GSMUA_Achr2P12960_001	Banana	vacuole	13.46	70.97
GSMUA_Achr4P31470_001	Banana	mitochondrion	56.57	70.88
Solyc04g008590.2.1	Tomato	plastid	88.38	70.83
Bra010796.1-P	Field mustard	plastid	87.16	70.72
CDY63670	Canola	plastid	86.85	70.47
AT1G30120.1	Thale cress	plastid	87.46	70.44
Solyc08g016750.2.1	Tomato	plastid	87.77	70.34
AT2G34590.1	Thale cress	plastid	87.16	70.2
PGSC0003DMT400019358	Potato	plastid	88.07	69.06
CDY51472	Canola	plastid	77.06	69.04
HORVU5Hr1G092920.4	Barley	plastid	95.72	67.31
PGSC0003DMT400080554	Potato	plastid	88.38	66.28
CDY54117	Canola	cytosol	23.24	65.52
CDY26291	Canola	plastid	59.33	61.59
CDY54116	Canola	cytosol	5.5	45.0
Os09t0509200-01	Rice	mitochondrion	42.51	36.97
Os08t0536000-01	Rice	mitochondrion	41.9	36.63
CDX90228	Canola	plastid	12.84	31.58
Os07t0170100-01	Rice	mitochondrion	33.03	29.19
Os09t0509300-01	Rice	plasma membrane	14.37	7.5

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	UniProt:A0A0N7KHQ4	ProteinID:BAS85465.1	ProteinID:BAS85466.1
ProteinID:BAS85467.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	EnsemblPlantsGene:Os03g0645100	EnsemblPlants:Os03t0645100-01
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF93	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0003938F7B
SEG:seg	:	:	:	:	:

Description

Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-01);Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-02);Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-03)

Coordinates

chr3:+:24902822..24905484

Molecular Weight (calculated)

36103.0 Da

IEP (calculated)

5.220

GRAVY (calculated)

0.039

Length

327 amino acids

Sequence
(BLAST)

001: LLFSHEVLLF EALREALIEE MKEDPTVCVF GEDVGHYGGS YKVTKGLAEM FGDLRVLDTP IAENSFTGMG VGAAMKGLRP VVEGMNMGFL LLAYNQISNN
101: CGMLHYTSGG QFKIPIVIRG PGGVGRQLGA EHSQRLESYF QSIPGLQMVA CSTPYNAKGL MKAAIRSENP VVLFEHVLLY NLKEKIPDEE YVLCLEEAEM
201: VRPGEHVTIL TYSRMRYHVM QAAKTLVNKG YDPEVIDIRS LKPFDLHTIG NSIKKTHRVL IVEECMRTGG IGASLRSAII DNFWDYLDAP IMCLSSQDVP
301: TPYAAPLEDA TVVQPAQIVA AVEQICQ

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.