Skip to main content
crop-pal logo
Maize
Search for another protein from :
Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
 extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23508561 doi
Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck
Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d005726_P001
Zm00001d013465_P001
Zm00001d018045_P001
Zm00001d020409_P002
Zm00001d032009_P001
Zm00001d033680_P001
Zm00001d037221_P001
Zm00001d037710_P001
Zm00001d040147_P001
Zm00001d044836_P001
Zm00001d050365_P006
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30120.1 Zm00001d013465_P001 AT1G14920.1 21798944
AT1G30120.1 Zm00001d033680_P001 AT1G14920.1 21798944
AT1G30120.1 Zm00001d040147_P001 AT1G70340.1 21798944
AT1G30120.1 Zm00001d005726_P001 AT3G17860.1 21798944
AT1G30120.1 Zm00001d020409_P002 AT3G17860.1 21798944
AT1G30120.1 Zm00001d032009_P001 AT3G17860.1 21798944
AT1G30120.1 Zm00001d050365_P006 AT3G17860.1 21798944
AT1G30120.1 Zm00001d037710_P001 AT3G21140.1 21798944
AT1G30120.1 Zm00001d018045_P001 AT3G47620.1 21798944
AT1G30120.1 Zm00001d037221_P001 AT3G47620.1 21798944
AT1G30120.1 Zm00001d044836_P001 AT3G47620.1 21798944
AT1G30120.1 Zm00001d052256_P001 AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d000227_P001 Maize cytosol 79.9 95.92
Os03t0645100-01 Rice plastid 81.46 95.41
EER93752 Sorghum plastid 93.47 92.51
CDX90227 Canola cytosol, mitochondrion, peroxisome 44.39 91.4
Bra032361.1-P Field mustard cytosol, mitochondrion, peroxisome 71.28 88.93
TraesCS5D01G384100.1 Wheat golgi 86.68 84.48
TraesCS5A01G374500.1 Wheat plastid 86.68 84.48
TraesCS5B01G376400.1 Wheat plastid 86.42 84.22
CDY54115 Canola mitochondrion, peroxisome, plastid 12.27 77.05
VIT_10s0003g03770.t01 Wine grape plastid 77.81 76.21
KRH15497 Soybean plastid 78.33 74.07
KRH42550 Soybean plastid 78.33 73.89
KRH05520 Soybean plastid 77.55 73.7
AT2G34590.1 Thale cress plastid 78.07 73.65
CDY63670 Canola plastid 77.28 73.45
KRH58644 Soybean nucleus 77.28 73.09
Solyc04g008590.2.1 Tomato plastid 77.81 73.04
GSMUA_Achr5P02560_001 Banana plastid 70.5 72.78
Bra010796.1-P Field mustard plastid 76.5 72.7
VIT_04s0043g00720.t01 Wine grape plastid 76.76 72.59
GSMUA_Achr2P12960_001 Banana vacuole 11.75 72.58
CDY51472 Canola plastid 68.93 72.33
AT1G30120.1 Thale cress plastid 76.5 72.17
Solyc08g016750.2.1 Tomato plastid 76.76 72.06
GSMUA_Achr4P31470_001 Banana mitochondrion 48.83 71.65
HORVU5Hr1G092920.4 Barley plastid 86.95 71.61
PGSC0003DMT400019358 Potato plastid 77.28 70.98
PGSC0003DMT400080554 Potato plastid 77.28 67.89
CDY54117 Canola cytosol 20.37 67.24
CDY26291 Canola plastid 54.57 66.35
CDY54116 Canola cytosol 4.7 45.0
CDX90228 Canola plastid 13.32 38.35
Zm00001d006107_P001 Maize mitochondrion 36.55 37.43
Zm00001d031659_P001 Maize mitochondrion 37.6 36.27
Zm00001d021070_P002 Maize mitochondrion 37.08 34.55
Zm00001d007892_P001 Maize mitochondrion 28.72 30.3
Protein Annotations
EntrezGene:100282233Gene3D:3.40.50.920Gene3D:3.40.50.970MapMan:5.1.2.2.1.2UniProt:B6T565EMBL:BT065974
EMBL:EU960130EMBL:EU964400EMBL:EU966358GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152InterPro:IPR009014ProteinID:ONM07017.1PFAM:PF02779PFAM:PF02780PANTHER:PTHR11624
PANTHER:PTHR11624:SF93SMART:SM00861SUPFAM:SSF52518SUPFAM:SSF52922InterPro:THDP-bindingInterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bdInterPro:Transketolase_CUniParc:UPI000182C98BEnsemblPlantsGene:Zm00001d033225EnsemblPlants:Zm00001d033225_P002EnsemblPlants:Zm00001d033225_T002
SEG:seg:::::
Description
Pyruvate dehydrogenase E1 component subunit beta-3 chloroplastic
Coordinates
chr1:-:255170489..255173301
Molecular Weight (calculated)
41357.1 Da
IEP (calculated)
6.243
GRAVY (calculated)
0.061
Length
383 amino acids
Sequence
(BLAST)
001: MATAFSLRAA APATAPRAVS RSTSAARVVP MASALAGRGR LVARAAVTAK ADVPSSTSDG HEVLLFEALR EALMEEMELD PTVCVFGEDV GHYGGSYKVT
101: KGLADTFGDL RVLDTPIAEN SFTGMGVGAG MKGLRPVVEG MNMGFLLLAY NQISNNCGML HYTSGGQFKI PLVIRGPGGV GRQLGAEHSQ RLESYFQSIP
201: GLQMVACSTP YNAKGLMKAA IRSENPVVLF EHVLLYNLKE KIPDEEYVLC LEEAEMVRPG EHVTILTYSR MRYHVMQAAK TLVNKGYDPE VIDIRSLKPF
301: DLHTIGNSIK KTHRVLIVEE CMRTGGIGAS LRSAIVDNFW DYLDAPIMCL SSQDVPTPYA ATLEDATVVQ PAQIVAAVEQ LCA
Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)
001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Arabidopsis Description
PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.