CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER93592
EER98873
EES02630
EES07255
EES15016
KXG25583
OQU86510

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	EER93592	AT1G14920.1	21798944
AT1G30120.1	EES02630	AT1G70340.1	21798944
AT1G30120.1	OQU86510	AT1G70340.1	21798944
AT1G30120.1	EER98873	AT3G17860.1	21798944
AT1G30120.1	EES15016	AT3G17860.1	21798944
AT1G30120.1	KXG25583	AT3G21140.1	21798944
AT1G30120.1	EER88112	AT3G47620.1	21798944
AT1G30120.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0645100-01	Rice	plastid	81.91	96.94
Zm00001d033225_P002	Maize	plastid	92.51	93.47
CDX90227	Canola	cytosol, mitochondrion, peroxisome	43.93	91.4
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	70.54	88.93
TraesCS5D01G384100.1	Wheat	golgi	88.37	87.02
TraesCS5A01G374500.1	Wheat	plastid	88.37	87.02
TraesCS5B01G376400.1	Wheat	plastid	88.11	86.77
EES16391	Sorghum	plastid	88.11	85.46
VIT_10s0003g03770.t01	Wine grape	plastid	77.26	76.47
CDY54115	Canola	mitochondrion, peroxisome, plastid	11.89	75.41
KRH05520	Soybean	plastid	77.78	74.69
KRH15497	Soybean	plastid	77.78	74.32
KRH58644	Soybean	nucleus	77.26	73.83
KRH42550	Soybean	plastid	77.26	73.65
CDY63670	Canola	plastid	76.49	73.45
VIT_04s0043g00720.t01	Wine grape	plastid	76.74	73.33
GSMUA_Achr5P02560_001	Banana	plastid	70.28	73.32
Solyc04g008590.2.1	Tomato	plastid	77.26	73.28
AT1G30120.1	Thale cress	plastid	76.74	73.15
Bra010796.1-P	Field mustard	plastid	75.97	72.95
GSMUA_Achr4P31470_001	Banana	mitochondrion	49.1	72.8
Solyc08g016750.2.1	Tomato	plastid	76.74	72.79
AT2G34590.1	Thale cress	plastid	76.23	72.66
CDY51472	Canola	plastid	68.48	72.6
GSMUA_Achr2P12960_001	Banana	vacuole	11.63	72.58
HORVU5Hr1G092920.4	Barley	plastid	86.82	72.26
PGSC0003DMT400019358	Potato	plastid	77.0	71.46
PGSC0003DMT400080554	Potato	plastid	76.49	67.89
CDY26291	Canola	plastid	53.75	66.03
CDY54117	Canola	cytosol	19.64	65.52
CDY54116	Canola	cytosol	4.65	45.0
CDX90228	Canola	plastid	13.44	39.1
EER97019	Sorghum	mitochondrion	36.95	38.13
KXG25507	Sorghum	mitochondrion	36.69	37.97
EER98039	Sorghum	mitochondrion	28.42	29.81

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	EntrezGene:8062209	UniProt:C5WR68	EnsemblPlants:EER93752
ProteinID:EER93752	ProteinID:EER93752.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0006086
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR009014	PFAM:PF02779
PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF93	SMART:SM00861	EnsemblPlantsGene:SORBI_3001G155500	SUPFAM:SSF52518
SUPFAM:SSF52922	unigene:Sbi.19598	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI0001A82B6F	RefSeq:XP_002466754.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:12592351..12595624

Molecular Weight (calculated)

41605.6 Da

IEP (calculated)

6.596

GRAVY (calculated)

0.097

Length

387 amino acids

Sequence
(BLAST)

001: MATAFSLRAA APATAPCAGL RSTSAVRVVS VAAAPAGRGR LVARAAVAAK ADAPSSAVAG KSDGHELLLF EALREALIEE MKLDPTVCVF GEDVGHYGGS
101: YKVTKGLADM FGDLRVLDTP IAENSFTGMG VGAGMKGLRP VVEGMNMGFL LLAYNQISNN CGMLHYTSGG QFKIPLVIRG PGGVGRQLGA EHSQRLESYF
201: QSIPGLQMVA CSTPYNAKGL MKAAIRSENP VVLFEHVLLY NLKEKIPDEE YVLCLEEAEM VRPGEHVTIL TYSRMRYHVM QAAKTLVNKG YDPEVIDIRS
301: LKPFDLHTIG NSIKKTHRVL IVEECMRTGG IGASLRSAII DNFWDYLDAP IMCLSSQDVP TPYAATLEDA TVVQPAQIVA AVEQICQ

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.