CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040147_P001	Maize	nucleus	92.29	87.54
OQU86510	Sorghum	cytosol	71.45	83.44
Os01t0108800-01	Rice	cytosol	31.7	78.36
TraesCS3A01G000300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	65.15	69.27
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	65.5	68.25
TraesCS3B01G003800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	64.62	67.46
HORVU3Hr1G000140.4	Barley	plastid	66.37	60.54
GSMUA_Achr8P14440_001	Banana	mitochondrion	47.46	52.72
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	48.86	49.47
VIT_01s0026g00030.t01	Wine grape	mitochondrion	46.06	44.43
KRH69557	Soybean	extracellular, mitochondrion, nucleus, vacuole	44.13	43.98
PGSC0003DMT400079598	Potato	mitochondrion	45.71	43.79
Solyc05g005580.2.1	Tomato	mitochondrion	45.01	43.12
KRH74610	Soybean	cytosol, extracellular, mitochondrion, nucleus	44.13	42.86
AT1G23790.1	Thale cress	nucleus	38.18	42.08
CDY61547	Canola	nucleus	37.3	41.76
CDY47633	Canola	nucleus	37.13	40.93
Bra024618.1-P	Field mustard	nucleus	36.95	40.89
CDX91723	Canola	nucleus	38.18	40.82
AT1G70340.1	Thale cress	mitochondrion	36.25	40.59
Bra016331.1-P	Field mustard	nucleus	37.3	39.74
CDY57317	Canola	nucleus	37.48	39.05
EES14150	Sorghum	cytosol, plasma membrane, plastid	26.62	20.46
EER95393	Sorghum	cytosol	19.79	19.96
EER99187	Sorghum	cytosol, mitochondrion, nucleus	25.92	19.92
KXG36592	Sorghum	plastid	20.14	17.42
EES09151	Sorghum	cytosol, mitochondrion, plastid	20.49	16.16
KXG28276	Sorghum	plastid	12.43	14.4

Protein Annotations

EnsemblPlants:EES02630	EnsemblPlantsGene:SORBI_3003G102000	EntrezGene:8070466	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928
PANTHER:PTHR31928:SF6	PFAM:PF06075	ProteinID:EES02630	ProteinID:EES02630.1	RefSeq:XP_002457510.1	SEG:seg
UniParc:UPI0001A84D2A	UniProt:C5XEY7	MapMan:20.1.5.4.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:9052391..9055428

Molecular Weight (calculated)

60665.2 Da

IEP (calculated)

10.478

GRAVY (calculated)

-0.427

Length

571 amino acids

Sequence
(BLAST)

001: MTTLSSGVLL KLLDGMKSGA AKPVGEHRTA VLQVTDIVPA ELDEKDLFPK HGKFYVKVSD ASHSIYATLP LAQADLVLSN KLHLGQFVHV DRLDPASPVP
101: VIVGARPLPG RHPLVVGTPD PAGRAKPAAP RRGSWGPEQN AAIKPTTLNF DAVRMTPVKE RPALSTPVKD RAGATTTPAR DRGAAVTPGR ERAVAASPAL
201: STASVRKSSS VLPRLTRSKS FVADRDQQQH PRIPKSPFPL EKSSVSCTAS RAMRRVAKEQ EPSSPPSDDE LGSSATSTKK RPSTAARVPM PGKLSLLGKD
301: AIEQREQAQK VALEALRNAS ATENVARIYK MFSELSKTAR PEAPVTCFES FLNFHQEAVQ AVTDIEAVQA ATSMAAAVAS DEQQHEDAPQ VLQEIAQNRA
401: VVRRRGIGFG AVSKSVSFAP GTLDPKQDDG GGKAIRSSSA SRKCLAMDKI GEDGGDEKRS SSSAPTSATT TPHSPLGSSL KLAKQIQAEA GSWFMDFLEA
501: ALETGLKKSK ASATGDGRKQ SSCCCPQSVM LRVINWVEME QSGGDSSGRR TAHPRAAAVA RKLRIKAKNP C

Best Arabidopsis Sequence Match ( AT1G23790.1 )
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP

Arabidopsis Description

At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.