CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57317	Canola	nucleus	90.82	88.5
CDY61547	Canola	nucleus	82.58	86.47
CDY47633	Canola	nucleus	82.77	85.33
AT1G23790.1	Thale cress	nucleus	79.21	81.66
KRH69557	Soybean	extracellular, mitochondrion, nucleus, vacuole	54.68	50.96
VIT_01s0026g00030.t01	Wine grape	mitochondrion	55.24	49.83
KRH74610	Soybean	cytosol, extracellular, mitochondrion, nucleus	54.87	49.83
PGSC0003DMT400079598	Potato	mitochondrion	55.24	49.5
Solyc05g005580.2.1	Tomato	mitochondrion	54.68	48.99
Os01t0108800-01	Rice	cytosol	21.16	48.92
GSMUA_Achr8P14440_001	Banana	mitochondrion	43.26	44.94
CDY05811	Canola	cytosol	10.3	42.64
TraesCS3A01G000300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	41.95	41.71
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	42.32	41.24
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	43.26	40.96
TraesCS3B01G003800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	41.57	40.59
EES02630	Sorghum	cytosol, extracellular, mitochondrion, nucleus	40.82	38.18
Zm00001d040147_P001	Maize	nucleus	40.82	36.21
HORVU3Hr1G000140.4	Barley	plastid	41.95	35.78
OQU86510	Sorghum	cytosol	32.58	35.58
CDX91320	Canola	extracellular	6.55	35.0
CDY08643	Canola	mitochondrion, nucleus	7.12	30.89
CDY06329	Canola	extracellular, nucleus, peroxisome	28.09	24.0
CDY69908	Canola	plastid	5.24	23.73
CDY22665	Canola	extracellular, nucleus, peroxisome	27.9	23.73
CDX97548	Canola	mitochondrion	20.97	22.09
CDY52268	Canola	mitochondrion	20.41	21.5
CDX93540	Canola	extracellular, nucleus, vacuole	29.4	21.33
CDX95036	Canola	extracellular, nucleus, vacuole	29.21	21.22
CDY69222	Canola	mitochondrion, plastid	16.48	20.75
CDY64935	Canola	mitochondrion	24.16	19.72
CDY01127	Canola	mitochondrion	23.22	19.68
CDY60513	Canola	plastid	19.29	19.0
CDY42075	Canola	plastid	19.29	18.83
CDY43695	Canola	mitochondrion	23.41	18.83
CDX82287	Canola	endoplasmic reticulum	20.22	17.17
CDY22966	Canola	endoplasmic reticulum	20.04	16.98

Protein Annotations

EnsemblPlants:CDX91723	EnsemblPlantsGene:GSBRNA2T00153222001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF20	PFAM:PF06075
ProteinID:CDX91723	ProteinID:CDX91723.1	SEG:seg	UniParc:UPI0004EDC13B	MapMan:20.1.5.4.2	:

Description

BnaC08g06420D

Coordinates

chrLK031869:+:541504..543336

Molecular Weight (calculated)

57996.5 Da

IEP (calculated)

10.408

GRAVY (calculated)

-0.580

Length

534 amino acids

Sequence
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL VQVTDIVPID LDEKNLLPKE GFFIKLSDSS HSIYVTLPSD QDDVVLSNKM QLGQFIYVDR LDPGTPVPIV
101: QGARPIPGRH PLLGTPEVSA RGTERQRRGS WGQNGDVASP FVLKSPAALD FDQCTPAKQM RFGFGAAGAS PMTRGRSPGG VRCSYGGGGV LGKLKGESPA
201: SMMRKSCVVP PSAKFPRSRS VCDRETAKMS SVSSSALLSP FKSSAKKSNS PPPSVRTRRA TAAAALMEEE RDAPKSTFKL ASPKHCKVEK PEKSSSLTGR
301: LSTLSKEAMQ QRETAQKIAL QALREATVSE TLVRHLKTLA NLSKSAKPDC PAACFEKFLE FHKQISETMS EISAIEAAVS SASENKSEDG TTSLILNEIQ
401: HNSIDQEKTA TKRRTASLKQ QQNHKQLRSN DENKNPSAPP PPPPSGLGNT ARLAKETEKE AANWFMEFIE KALEKGMKKC KGTGDADVKK VPQSLILQVV
501: NWVEAEQSAD NTRRQVHPRA SQITRKLRIK MKNP

Best Arabidopsis Sequence Match ( AT1G23790.1 )
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP

Arabidopsis Description

At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.