CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024618.1-P	Field mustard	nucleus	96.67	95.54
CDY47633	Canola	nucleus	94.12	92.66
CDX91723	Canola	nucleus	86.47	82.58
CDY57317	Canola	nucleus	85.1	79.2
AT1G23790.1	Thale cress	nucleus	79.8	78.57
KRH69557	Soybean	extracellular, mitochondrion, nucleus, vacuole	56.67	50.44
VIT_01s0026g00030.t01	Wine grape	mitochondrion	57.65	49.66
KRH74610	Soybean	cytosol, extracellular, mitochondrion, nucleus	56.86	49.32
Os01t0108800-01	Rice	cytosol	21.96	48.48
PGSC0003DMT400079598	Potato	mitochondrion	56.08	47.99
Solyc05g005580.2.1	Tomato	mitochondrion	55.49	47.48
CDY05811	Canola	cytosol	11.76	46.51
GSMUA_Achr8P14440_001	Banana	mitochondrion	44.9	44.55
TraesCS3A01G000300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	43.33	41.15
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	43.53	40.51
TraesCS3B01G003800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	42.94	40.04
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	43.92	39.72
CDX91320	Canola	extracellular	7.65	39.0
EES02630	Sorghum	cytosol, extracellular, mitochondrion, nucleus	41.76	37.3
Zm00001d040147_P001	Maize	nucleus	41.96	35.55
HORVU3Hr1G000140.4	Barley	plastid	43.14	35.14
OQU86510	Sorghum	cytosol	33.14	34.56
CDY08643	Canola	mitochondrion, nucleus	8.24	34.15
CDY69908	Canola	plastid	6.08	26.27
CDY06329	Canola	extracellular, nucleus, peroxisome	29.22	23.84
CDY22665	Canola	extracellular, nucleus, peroxisome	29.02	23.57
CDX97548	Canola	mitochondrion	21.57	21.7
CDY52268	Canola	mitochondrion	21.18	21.3
CDX93540	Canola	extracellular, nucleus, vacuole	30.39	21.06
CDX95036	Canola	extracellular, nucleus, vacuole	30.2	20.95
CDY69222	Canola	mitochondrion, plastid	17.25	20.75
CDY64935	Canola	mitochondrion	24.9	19.42
CDY01127	Canola	mitochondrion	23.33	18.89
CDY60513	Canola	plastid	19.61	18.45
CDY43695	Canola	mitochondrion	23.92	18.37
CDY42075	Canola	plastid	19.61	18.28
CDX82287	Canola	endoplasmic reticulum	21.18	17.17
CDY22966	Canola	endoplasmic reticulum	20.98	16.98

Protein Annotations

EnsemblPlants:CDY61547	EnsemblPlantsGene:GSBRNA2T00034003001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF20	PFAM:PF06075
ProteinID:CDY61547	ProteinID:CDY61547.1	SEG:seg	UniParc:UPI0004EDEFD2	UniProt:A0A078J980	MapMan:20.1.5.4.2

Description

BnaA09g29900DBnaA09g29900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J980]

Coordinates

chrLK034009:+:35118..36951

Molecular Weight (calculated)

55760.9 Da

IEP (calculated)

10.419

GRAVY (calculated)

-0.602

Length

510 amino acids

Sequence
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTREHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVTDSS HSIYVSLPSD QDDVVLSNKL QLGQFIYVDR LEPGTPVPIV
101: QGARPIPGRH PLLGTPEPLM SCTRGGGKGE NERGRGSWDL NGDVLVLKPA SLDFDQCTPA KQRVMTRGRS PGGVRCSYGG GVLRGESPGS VMRKSCVVVP
201: SRSRSVCDRE TMKSSVSSAL FSPFKSSAKK SNSPPPSGRT RRATAAAALV ENERDAPKST SKLASPKHSK MEKQERFSTL TGRLSTLSKE AMQQRETAQK
301: MALQALREAT VTETVVRHLK TLANISKSAK ADCPAACFEK FLEFHKQISE TMTEIASIEA ANVNKSEDGS SSILNEIQHN SIDQEKTASK RRTTALKQQQ
401: NHKKLRSNDE NKNPSAAPPP SGLGNSVKLA KEIENEAANW FMEFIEKALE KGMKKCKGTG DADVKKVPQP LILQVVNWVE AEQSADNTRR PVHPKASQIT
501: RKLRIKMKNP

Best Arabidopsis Sequence Match ( AT1G23790.1 )
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP

Arabidopsis Description

At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.