Factsheet for VIT_01s0026g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69557	Soybean	extracellular, mitochondrion, nucleus, vacuole	65.37	67.54
Solyc05g005580.2.1	Tomato	mitochondrion	67.23	66.78
PGSC0003DMT400079598	Potato	mitochondrion	67.23	66.78
KRH74610	Soybean	cytosol, extracellular, mitochondrion, nucleus	65.71	66.16
AT1G23790.1	Thale cress	nucleus	52.36	59.85
CDY61547	Canola	nucleus	49.66	57.65
Bra024618.1-P	Field mustard	nucleus	49.66	56.98
CDY47633	Canola	nucleus	49.66	56.76
CDX91723	Canola	nucleus	49.83	55.24
Bra016331.1-P	Field mustard	nucleus	50.0	55.22
AT1G70340.1	Thale cress	mitochondrion	46.45	53.92
Os01t0108800-01	Rice	cytosol	20.95	53.68
CDY57317	Canola	nucleus	49.66	53.65
GSMUA_Achr8P14440_001	Banana	mitochondrion	46.45	53.5
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	47.64	50.0
EES02630	Sorghum	cytosol, extracellular, mitochondrion, nucleus	44.43	46.06
TraesCS3A01G000300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	41.22	45.44
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	41.55	44.89
TraesCS3B01G003800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	40.88	44.24
OQU86510	Sorghum	cytosol	36.32	43.97
Zm00001d040147_P001	Maize	nucleus	44.26	43.52
HORVU3Hr1G000140.4	Barley	plastid	41.72	39.46
VIT_09s0002g00760.t01	Wine grape	mitochondrion	22.3	24.95
VIT_05s0102g01200.t01	Wine grape	endoplasmic reticulum, extracellular, nucleus	29.73	23.82
VIT_11s0016g04380.t01	Wine grape	plastid	26.01	21.69
VIT_13s0320g00010.t01	Wine grape	cytosol	20.44	21.38

Protein Annotations

EntrezGene:100260333	wikigene:100260333	MapMan:20.1.5.4.2	EMBL:AM443010	ProteinID:CAN65145	ProteinID:CAN65145.1
ProteinID:CCB56671	ProteinID:CCB56671.1	InterPro:DUF936_pln	UniProt:F6HPP3	EMBL:FN596002	EntrezGene:LOC100260333
wikigene:LOC100260333	PFAM:PF06075	PANTHER:PTHR31928	PANTHER:PTHR31928:SF20	TIGR:TC61292	UniParc:UPI0001982BA5
ArrayExpress:VIT_01s0026g00030	EnsemblPlantsGene:VIT_01s0026g00030	EnsemblPlants:VIT_01s0026g00030.t01	unigene:Vvi.14867	RefSeq:XP_002264073	RefSeq:XP_002264073.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:8666036..8668413

Molecular Weight (calculated)

64459.6 Da

IEP (calculated)

10.359

GRAVY (calculated)

-0.506

Length

592 amino acids

Sequence
(BLAST)

001: MASLAPGILL KLLNGMNSGL KPTSEHRSSL LQVTDIVPAD LDEKNLWPKH GFYIKVSDSS HSIYVSLPFE QDDLVLSNKM QLGQFIYVDR LEPGSPVPVV
101: KGAKPLPGRH PLVGTPEPIM GLREKGEKAD QKANSKPSGH RRGSWGTPQN GGDAVSSPMA LKPIPLDFDQ CTPVKERPTL PMSPMIRSRV GKDGNPSSAA
201: RCSISGGQFA KMLDSKGESP AILRKSCVAH SASKFPRSKS VCDREPRIPR SPFNSAEKKS TTPPPSLRNP RLADSFSMAG NAQNSSDSRM MTLQQQSQPV
301: NSVSNNNSSL PMVLPGKLAV LGKEAAQQRE TAQKIALQAL RDASATETLV RSLKMLSNLS KSAKADAPAA CFDQFLDFHL QIVQAVTDMV SIQAATEMAQ
401: TPNAEGKGAF GKQHEEDSPI LHEIMHNSMD QNRNSLNLSK RRSVLYKSIA VIPERSDQKT SLGKHLRLIP NPKAALERKG GTTPLGKLPF EAAENDENIK
501: PASCILSNTI KLGKQVETEA GNWFMDFLEK ALETGLKKQK GTAVGDARKV PQSLILKVIN WVEVEQCDSS KRPVHPRAAQ IARKLRIKMK NP

Best Arabidopsis Sequence Match ( AT1G23790.1 )
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP

Arabidopsis Description

At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.