Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G000300.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 80.19 | 93.48 |
| TraesCS3B01G003800.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 80.99 | 92.69 |
| TraesCS3D01G008800.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 80.83 | 92.34 |
| Os01t0108800-01 | Rice | cytosol | 27.48 | 74.46 |
| EES02630 | Sorghum | cytosol, extracellular, mitochondrion, nucleus | 60.54 | 66.37 |
| Zm00001d040147_P001 | Maize | nucleus | 61.18 | 63.62 |
| OQU86510 | Sorghum | cytosol | 45.53 | 58.28 |
| GSMUA_Achr8P14440_001 | Banana | mitochondrion | 44.41 | 54.09 |
| GSMUA_Achr9P00810_001 | Banana | cytosol, mitochondrion, nucleus | 42.01 | 46.63 |
| AT1G23790.1 | Thale cress | nucleus | 35.78 | 43.24 |
| CDY61547 | Canola | nucleus | 35.14 | 43.14 |
| Bra024618.1-P | Field mustard | nucleus | 35.3 | 42.83 |
| KRH69557 | Soybean | extracellular, mitochondrion, nucleus, vacuole | 38.98 | 42.58 |
| KRH74610 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 39.78 | 42.35 |
| Bra016331.1-P | Field mustard | nucleus | 35.94 | 41.98 |
| CDX91723 | Canola | nucleus | 35.78 | 41.95 |
| VIT_01s0026g00030.t01 | Wine grape | mitochondrion | 39.46 | 41.72 |
| CDY47633 | Canola | nucleus | 34.5 | 41.7 |
| AT1G70340.1 | Thale cress | mitochondrion | 33.71 | 41.37 |
| PGSC0003DMT400079598 | Potato | mitochondrion | 39.3 | 41.28 |
| CDY57317 | Canola | nucleus | 35.94 | 41.06 |
| Solyc05g005580.2.1 | Tomato | mitochondrion | 38.66 | 40.6 |
| HORVU5Hr1G079460.1 | Barley | cytosol, mitochondrion, plastid | 23.16 | 19.28 |
| HORVU4Hr1G077070.1 | Barley | cytosol | 17.89 | 18.98 |
| HORVU4Hr1G024120.1 | Barley | plastid | 20.93 | 17.28 |
| HORVU4Hr1G024210.1 | Barley | mitochondrion | 19.01 | 16.74 |
| HORVU2Hr1G035200.1 | Barley | plastid | 9.27 | 14.95 |
| HORVU4Hr1G014370.1 | Barley | nucleus, plastid | 10.86 | 14.59 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G000140.4 | EnsemblPlantsGene:HORVU3Hr1G000140 | InterPro:DUF936_pln | ncoils:Coil | PANTHER:PTHR31928 | PANTHER:PTHR31928:SF6 |
| PFAM:PF06075 | SEG:seg | UniParc:UPI000B46D3B6 | UniProt:A0A287JV47 | MapMan:20.1.5.4.2 | : |
Description
No Description!
Coordinates
chrchr3H:-:351605..354413
Molecular Weight (calculated)
65553.3 Da
IEP (calculated)
10.768
GRAVY (calculated)
-0.368
Length
626 amino acids
Sequence
(BLAST)
(BLAST)
001: RHPPPSSSLY RCSPVQLHPA SLSSSPVDAT AFSLPPSSPP PGDPVVAAKL PVKPSPLLPP AAGREIKLPS SPPDRIAMAT LSAGVLLKLL DGMKTGAAKP
101: VGEHRTAVLQ VTDIVPAEMD EVDLFPKHGR FYVKVSDSSH SIYATLPPAQ ADLVLANKLS LGQFVHVDRL DPGSPVPVVV GARPIPGRHP LVVGTPEPAR
201: KPAAPRRGSW GPENHGGAGV LAASPKVVRP IALSFEDRTP VKERPSPARS SASVRKSTSV MPRLVTRSRS FVADRGDPPP PPNKIPKSPF PPEKSSMSCT
301: AVRTMSRRAR DEEPSSPVSD DDAGSTATSS KRRPSSSAAR VPVPGKLSSL GKEAMEQREQ AQKVALEALR NASATENVVR IYKMFAEVSK AARPDAPAAC
401: FDGFLSFHQE AAQAVADIES IQAATSMAAA AATNDVLVEA TPAPNVLQEI AQNRAATPAR RRGLLGFGGM SKSVSFAPGT LQDPSSRPDG GGARSSSASR
501: KCLGGMPDKA PVDGDDKNKR SSAPAAVAVG NSPLGSSLRM ARQMQAEAGG WFMEFLEAAL EAGLKKKRSS TGTGKPSAAQ NCPQSLVLRV INWVEMEQSG
601: GESRKSAGHP RAAAIARKLR IKAKNP
101: VGEHRTAVLQ VTDIVPAEMD EVDLFPKHGR FYVKVSDSSH SIYATLPPAQ ADLVLANKLS LGQFVHVDRL DPGSPVPVVV GARPIPGRHP LVVGTPEPAR
201: KPAAPRRGSW GPENHGGAGV LAASPKVVRP IALSFEDRTP VKERPSPARS SASVRKSTSV MPRLVTRSRS FVADRGDPPP PPNKIPKSPF PPEKSSMSCT
301: AVRTMSRRAR DEEPSSPVSD DDAGSTATSS KRRPSSSAAR VPVPGKLSSL GKEAMEQREQ AQKVALEALR NASATENVVR IYKMFAEVSK AARPDAPAAC
401: FDGFLSFHQE AAQAVADIES IQAATSMAAA AATNDVLVEA TPAPNVLQEI AQNRAATPAR RRGLLGFGGM SKSVSFAPGT LQDPSSRPDG GGARSSSASR
501: KCLGGMPDKA PVDGDDKNKR SSAPAAVAVG NSPLGSSLRM ARQMQAEAGG WFMEFLEAAL EAGLKKKRSS TGTGKPSAAQ NCPQSLVLRV INWVEMEQSG
601: GESRKSAGHP RAAAIARKLR IKAKNP
001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP
Arabidopsis Description
At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.