Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- extracellular 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G003800.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 93.43 | 93.6 |
| TraesCS3A01G000300.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 91.42 | 93.3 |
| HORVU3Hr1G000140.4 | Barley | plastid | 92.34 | 80.83 |
| Os01t0108800-01 | Rice | cytosol | 30.47 | 72.29 |
| EES02630 | Sorghum | cytosol, extracellular, mitochondrion, nucleus | 68.25 | 65.5 |
| Zm00001d040147_P001 | Maize | nucleus | 69.53 | 63.29 |
| OQU86510 | Sorghum | cytosol | 51.46 | 57.67 |
| GSMUA_Achr8P14440_001 | Banana | mitochondrion | 49.27 | 52.53 |
| GSMUA_Achr9P00810_001 | Banana | cytosol, mitochondrion, nucleus | 47.99 | 46.63 |
| CDY61547 | Canola | nucleus | 40.51 | 43.53 |
| AT1G23790.1 | Thale cress | nucleus | 40.88 | 43.24 |
| Bra024618.1-P | Field mustard | nucleus | 40.15 | 42.64 |
| KRH69557 | Soybean | extracellular, mitochondrion, nucleus, vacuole | 44.53 | 42.58 |
| Bra016331.1-P | Field mustard | nucleus | 41.42 | 42.35 |
| CDX91723 | Canola | nucleus | 41.24 | 42.32 |
| KRH74610 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 45.07 | 42.01 |
| VIT_01s0026g00030.t01 | Wine grape | mitochondrion | 44.89 | 41.55 |
| CDY47633 | Canola | nucleus | 39.23 | 41.51 |
| CDY57317 | Canola | nucleus | 41.42 | 41.42 |
| AT1G70340.1 | Thale cress | mitochondrion | 38.32 | 41.18 |
| PGSC0003DMT400079598 | Potato | mitochondrion | 44.71 | 41.11 |
| Solyc05g005580.2.1 | Tomato | mitochondrion | 43.98 | 40.44 |
| TraesCS7D01G268500.2 | Wheat | cytosol, mitochondrion, nucleus | 26.82 | 20.05 |
| TraesCS4D01G297000.1 | Wheat | cytosol | 20.99 | 19.49 |
| TraesCS5D01G309900.1 | Wheat | cytosol, mitochondrion, plastid | 26.28 | 19.25 |
| TraesCS2D01G193600.1 | Wheat | plastid | 20.99 | 17.64 |
| TraesCS4D01G121400.1 | Wheat | mitochondrion | 21.72 | 16.48 |
| TraesCS4D01G082000.1 | Wheat | nucleus, plastid | 13.5 | 15.81 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G008800.1 | EnsemblPlantsGene:TraesCS3D01G008800 | InterPro:DUF936_pln | ncoils:Coil | PANTHER:PTHR31928 | PANTHER:PTHR31928:SF6 |
| PFAM:PF06075 | SEG:seg | MapMan:20.1.5.4.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:3030234..3032281
Molecular Weight (calculated)
57782.9 Da
IEP (calculated)
10.623
GRAVY (calculated)
-0.369
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLSAGVLL KLLDGMKTGL AKPVGEHRTA VLQVTDIVPA EMDEVDLFPK HGRFYVKVSD SSHSIYATLP PAQADLVLAN KLSLGQFLHV DRLDPGSPVP
101: VVVGARPIPG RHPLVVGTPE PARKPAAPRR GSWGPENHGG ASGVLLASSP KVVRPIALSF EERTPVKERP SPARSSVSSV RKSTSVMPRL VTRSRSFVAD
201: RGDPPPPPNK IPKNPFQPEK SSMSCTAVRT MSRRPREEEP SSPVSDDDVG STATSSKRRP SSAARVPVPV KLSSLGKEAM EQREQAQKAA LEALRNASAT
301: ENVVRIYKMF AEVSKAARPD APAACFDGFL CFHQEAAQAV ADIESIQAAT SMAAAAATSD VLASEAEASP APNVLQEIAQ NRATTPARRR GLLGFGGVSK
401: SVSFAPGTLQ DPSSRPDGGA ARNSSASRKC LDKTAVGDGD DKSKRSSAPA AVSVAHSPLG SSLRMAKQMQ AEAGGWFMEF LEAALEAGLK KKQTSSSGKP
501: GAQSCPQSLV LRVINWVEME QSGGDSRKAG HPRAAAVARK LRIKAKNP
101: VVVGARPIPG RHPLVVGTPE PARKPAAPRR GSWGPENHGG ASGVLLASSP KVVRPIALSF EERTPVKERP SPARSSVSSV RKSTSVMPRL VTRSRSFVAD
201: RGDPPPPPNK IPKNPFQPEK SSMSCTAVRT MSRRPREEEP SSPVSDDDVG STATSSKRRP SSAARVPVPV KLSSLGKEAM EQREQAQKAA LEALRNASAT
301: ENVVRIYKMF AEVSKAARPD APAACFDGFL CFHQEAAQAV ADIESIQAAT SMAAAAATSD VLASEAEASP APNVLQEIAQ NRATTPARRR GLLGFGGVSK
401: SVSFAPGTLQ DPSSRPDGGA ARNSSASRKC LDKTAVGDGD DKSKRSSAPA AVSVAHSPLG SSLRMAKQMQ AEAGGWFMEF LEAALEAGLK KKQTSSSGKP
501: GAQSCPQSLV LRVINWVEME QSGGDSRKAG HPRAAAVARK LRIKAKNP
001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP
Arabidopsis Description
At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.