Factsheet for TraesCS3A01G000300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

mitochondrion 3
extracellular 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	93.3	91.42
TraesCS3B01G003800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	92.92	91.22
HORVU3Hr1G000140.4	Barley	plastid	93.48	80.19
Os01t0108800-01	Rice	cytosol	31.66	73.59
EES02630	Sorghum	cytosol, extracellular, mitochondrion, nucleus	69.27	65.15
Zm00001d040147_P001	Maize	nucleus	71.32	63.62
OQU86510	Sorghum	cytosol	52.14	57.26
GSMUA_Achr8P14440_001	Banana	mitochondrion	50.09	52.33
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	48.6	46.28
CDY61547	Canola	nucleus	41.15	43.33
AT1G23790.1	Thale cress	nucleus	41.71	43.24
Bra024618.1-P	Field mustard	nucleus	40.97	42.64
KRH69557	Soybean	extracellular, mitochondrion, nucleus, vacuole	45.44	42.58
KRH74610	Soybean	cytosol, extracellular, mitochondrion, nucleus	46.37	42.35
Bra016331.1-P	Field mustard	nucleus	42.09	42.16
CDX91723	Canola	nucleus	41.71	41.95
PGSC0003DMT400079598	Potato	mitochondrion	46.0	41.44
CDY47633	Canola	nucleus	39.85	41.31
VIT_01s0026g00030.t01	Wine grape	mitochondrion	45.44	41.22
CDY57317	Canola	nucleus	41.9	41.06
AT1G70340.1	Thale cress	mitochondrion	38.92	40.98
Solyc05g005580.2.1	Tomato	mitochondrion	45.25	40.77
TraesCS4A01G006800.1	Wheat	cytosol	22.16	20.17
TraesCS7A01G266300.1	Wheat	cytosol, mitochondrion, plastid	25.88	18.91
TraesCS5A01G303100.1	Wheat	cytosol, mitochondrion, plastid	26.07	18.64
TraesCS2A01G194300.1	Wheat	plastid	20.48	16.82
TraesCS4A01G192100.1	Wheat	mitochondrion	21.79	16.53
TraesCS4A01G231900.1	Wheat	nucleus, plastid	13.22	15.88

Protein Annotations

EnsemblPlants:TraesCS3A01G000300.1	EnsemblPlantsGene:TraesCS3A01G000300	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF6
PFAM:PF06075	SEG:seg	MapMan:20.1.5.4.2	:	:	:

Description

No Description!

Coordinates

chr3A:-:84488..86662

Molecular Weight (calculated)

56484.3 Da

IEP (calculated)

10.712

GRAVY (calculated)

-0.370

Length

537 amino acids

Sequence
(BLAST)

001: MATLSAGVLL KLLDGMKTGA AKPVGEHRTA VLQVTDIVPA EMDEVDLFPK HGRFYVKVSD SSHSIYATLP PAQADLVLAN KLSLGQFLHV DRLDPGSPVP
101: VVVGARPIPG RHPLVVGTPE PLARKPAAPR RGSWGPENHG GATAASPKVV RPIALSFEER TPVKERPSPA RSSASSVRKS TSVMPRLMTR SRSFVADRGD
201: PPPPPNKIPK SPFQPEKSSL SCTAVRTMSR RPREEEPSSP VSDDDVGSTA TSSRAARVPV PGKLSSLGKE AMEQREQAQK VALEALRNAS ATDNVVRIYK
301: MFAEVSKAAR PDAPAACFDG FLSFHQEAAQ AVADIESIQA ATSMAAAAAT SDVLAEAEAT PAPAPNVLQE IAQNRATTPG RRRGLLGFGS VSKSVSFAPG
401: TLQDPSSRPD GAARSSSASR KTPVGDGDDK SKRSSAPAAV AVGNSPLGSS LRMAKQMQAE AGSWFMEFLE AALEAGLKKK RSSTGKGATA AQGCPQSLVL
501: RVINWVEMEQ SGGESRKAGH PRAAAIARKL RIKAKNP

Best Arabidopsis Sequence Match ( AT1G23790.1 )
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP

Arabidopsis Description

At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.