Factsheet for TraesCS3B01G003800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, nucleus, mitochondrion

Predictor Summary:

mitochondrion 3
extracellular 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	93.6	93.43
TraesCS3A01G000300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	91.22	92.92
HORVU3Hr1G000140.4	Barley	plastid	92.69	80.99
Os01t0108800-01	Rice	cytosol	30.71	72.73
EES02630	Sorghum	cytosol, extracellular, mitochondrion, nucleus	67.46	64.62
Zm00001d040147_P001	Maize	nucleus	69.29	62.96
OQU86510	Sorghum	cytosol	50.82	56.85
GSMUA_Achr8P14440_001	Banana	mitochondrion	49.18	52.33
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	47.35	45.92
AT1G23790.1	Thale cress	nucleus	40.77	43.05
CDY61547	Canola	nucleus	40.04	42.94
Bra024618.1-P	Field mustard	nucleus	40.04	42.44
KRH69557	Soybean	extracellular, mitochondrion, nucleus, vacuole	43.69	41.71
Bra016331.1-P	Field mustard	nucleus	40.77	41.6
CDX91723	Canola	nucleus	40.59	41.57
CDY47633	Canola	nucleus	39.31	41.51
KRH74610	Soybean	cytosol, extracellular, mitochondrion, nucleus	44.61	41.5
PGSC0003DMT400079598	Potato	mitochondrion	44.79	41.11
VIT_01s0026g00030.t01	Wine grape	mitochondrion	44.24	40.88
CDY57317	Canola	nucleus	40.77	40.69
AT1G70340.1	Thale cress	mitochondrion	37.84	40.59
Solyc05g005580.2.1	Tomato	mitochondrion	44.06	40.44
TraesCS7B01G166200.1	Wheat	cytosol, mitochondrion, plastid	27.24	20.33
TraesCS5B01G303400.1	Wheat	cytosol, mitochondrion, plastid	26.51	19.31
TraesCS4B01G298200.1	Wheat	cytosol	20.48	18.98
TraesCS4B01G123300.1	Wheat	mitochondrion	21.75	16.95
TraesCS2B01G212600.1	Wheat	plastid	20.29	16.87
TraesCS4B01G084100.1	Wheat	nucleus, plastid	13.16	15.48

Protein Annotations

EnsemblPlants:TraesCS3B01G003800.1	EnsemblPlantsGene:TraesCS3B01G003800	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF6
PFAM:PF06075	SEG:seg	MapMan:20.1.5.4.2	:	:	:

Description

No Description!

Coordinates

chr3B:+:2405902..2408473

Molecular Weight (calculated)

57439.6 Da

IEP (calculated)

10.760

GRAVY (calculated)

-0.344

Length

547 amino acids

Sequence
(BLAST)

001: MATLSAGVLL KLLDGMKTGA AKPVGEHRTA VLQVTDIVPA EMDEVDLFPK HGRFYVKVSD SSHSIYATLP PAQADLVLAN KLSLGQFLHV DRLDPGSPVP
101: VVVGARPIPG RHPLVVGTPE PLARKPAAPR RGSWGPENHG GATVASPKVV RPIALCFEER TPVKERPSPA RSSVSSVRKS TSVMPRLVTR SRSFVADRGD
201: PPPPPNKIPK SPLAPEKSSM SCTAVRTMSR RPREEEPSSP VSDDDAGSTA TSSKRRPSSS AARVPVPVKL SSLGKEAMEQ REQAQKAALE ALRNASATDN
301: VVRIYKMFAD VSKAARPDAP AACFDGFLSF HQEAAQAVAD IESIQAATSM AAAATSDVLA EATPAPNVLQ EIAQNRATTP ARRRGLLGFG GVSKSVSFAP
401: GTLQDPSSRQ DGGGARSSSA SRKCLGTPVD GGDDKSKRSS APAGVAVVAV AQSPLGSSLR MARQMQAEAG GWFMEFLEAA LEAGLKKKRT SSSGKPGATG
501: AQSCPQSLVL RVINWVEMEQ SGGESRKAGH PRAAAIARKL RIKAKNP

Best Arabidopsis Sequence Match ( AT1G23790.1 )
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP

Arabidopsis Description

At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.