Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61547 | Canola | nucleus | 78.57 | 79.8 |
| CDY47633 | Canola | nucleus | 79.73 | 79.73 |
| Bra024618.1-P | Field mustard | nucleus | 79.34 | 79.65 |
| CDX91723 | Canola | nucleus | 81.66 | 79.21 |
| Bra016331.1-P | Field mustard | nucleus | 80.89 | 78.17 |
| CDY57317 | Canola | nucleus | 80.12 | 75.73 |
| AT1G70340.1 | Thale cress | mitochondrion | 67.18 | 68.24 |
| KRH69557 | Soybean | extracellular, mitochondrion, nucleus, vacuole | 60.23 | 54.45 |
| KRH74610 | Soybean | cytosol, extracellular, mitochondrion, nucleus | 59.85 | 52.72 |
| VIT_01s0026g00030.t01 | Wine grape | mitochondrion | 59.85 | 52.36 |
| PGSC0003DMT400079598 | Potato | mitochondrion | 59.27 | 51.51 |
| Solyc05g005580.2.1 | Tomato | mitochondrion | 59.07 | 51.34 |
| Os01t0108800-01 | Rice | cytosol | 22.78 | 51.08 |
| GSMUA_Achr8P14440_001 | Banana | mitochondrion | 46.14 | 46.5 |
| GSMUA_Achr9P00810_001 | Banana | cytosol, mitochondrion, nucleus | 45.95 | 42.2 |
| TraesCS3A01G000300.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 43.24 | 41.71 |
| TraesCS3D01G008800.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 43.24 | 40.88 |
| TraesCS3B01G003800.1 | Wheat | cytosol, extracellular, mitochondrion, nucleus | 43.05 | 40.77 |
| EES02630 | Sorghum | cytosol, extracellular, mitochondrion, nucleus | 42.08 | 38.18 |
| Zm00001d040147_P001 | Maize | nucleus | 42.66 | 36.71 |
| HORVU3Hr1G000140.4 | Barley | plastid | 43.24 | 35.78 |
| OQU86510 | Sorghum | cytosol | 33.01 | 34.97 |
| AT3G14170.2 | Thale cress | cytosol, golgi, mitochondrion, nucleus | 23.55 | 24.11 |
| AT1G08760.1 | Thale cress | cytosol, plastid, vacuole | 29.92 | 20.72 |
| AT4G13370.1 | Thale cress | endoplasmic reticulum, mitochondrion | 25.1 | 19.32 |
| AT2G31920.1 | Thale cress | plastid | 21.04 | 18.63 |
| AT3G19610.1 | Thale cress | vacuole | 22.39 | 18.12 |
Protein Annotations
| MapMan:20.1.5.4.2 | EntrezGene:838990 | UniProt:A0A178W8R5 | ProteinID:AAC98034.1 | ProteinID:AEE30432.1 | ArrayExpress:AT1G23790 |
| EnsemblPlantsGene:AT1G23790 | RefSeq:AT1G23790 | TAIR:AT1G23790 | RefSeq:AT1G23790-TAIR-G | EnsemblPlants:AT1G23790.1 | TAIR:AT1G23790.1 |
| Unigene:At.41518 | EMBL:BT023432 | InterPro:DUF936_pln | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008017 | GO:GO:0008150 | RefSeq:NP_173791.2 | ProteinID:OAP14849.1 | PFAM:PF06075 | PO:PO:0000037 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31928 | PANTHER:PTHR31928:SF20 | UniProt:Q9ZUB7 | UniParc:UPI000009D1BA |
| SEG:seg | : | : | : | : | : |
Description
At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
Coordinates
chr1:+:8409945..8412079
Molecular Weight (calculated)
56950.6 Da
IEP (calculated)
10.377
GRAVY (calculated)
-0.581
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.