CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016331.1-P	Field mustard	nucleus	94.71	96.83
CDX91723	Canola	nucleus	88.5	90.82
CDY61547	Canola	nucleus	79.2	85.1
CDY47633	Canola	nucleus	79.93	84.56
AT1G23790.1	Thale cress	nucleus	75.73	80.12
KRH69557	Soybean	extracellular, mitochondrion, nucleus, vacuole	53.47	51.13
Os01t0108800-01	Rice	cytosol	21.17	50.22
KRH74610	Soybean	cytosol, extracellular, mitochondrion, nucleus	53.65	50.0
VIT_01s0026g00030.t01	Wine grape	mitochondrion	53.65	49.66
PGSC0003DMT400079598	Potato	mitochondrion	52.55	48.32
Solyc05g005580.2.1	Tomato	mitochondrion	52.37	48.15
GSMUA_Achr8P14440_001	Banana	mitochondrion	42.34	45.14
CDY05811	Canola	cytosol	10.58	44.96
TraesCS3A01G000300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	41.06	41.9
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	41.42	41.42
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	42.15	40.96
TraesCS3B01G003800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	40.69	40.77
EES02630	Sorghum	cytosol, extracellular, mitochondrion, nucleus	39.05	37.48
CDX91320	Canola	extracellular	6.75	37.0
HORVU3Hr1G000140.4	Barley	plastid	41.06	35.94
Zm00001d040147_P001	Maize	nucleus	39.42	35.88
OQU86510	Sorghum	cytosol	31.2	34.97
CDY08643	Canola	mitochondrion, nucleus	7.3	32.52
CDY69908	Canola	plastid	5.29	24.58
CDY06329	Canola	extracellular, nucleus, peroxisome	26.82	23.52
CDY22665	Canola	extracellular, nucleus, peroxisome	26.82	23.41
CDX97548	Canola	mitochondrion	20.62	22.29
CDY52268	Canola	mitochondrion	20.07	21.7
CDX93540	Canola	extracellular, nucleus, vacuole	28.65	21.33
CDX95036	Canola	extracellular, nucleus, vacuole	28.28	21.09
CDY69222	Canola	mitochondrion, plastid	16.06	20.75
CDY64935	Canola	mitochondrion	23.72	19.88
CDY01127	Canola	mitochondrion	22.26	19.37
CDY60513	Canola	plastid	18.43	18.63
CDY43695	Canola	mitochondrion	22.45	18.52
CDY42075	Canola	plastid	18.43	18.46
CDX82287	Canola	endoplasmic reticulum	19.71	17.17
CDY22966	Canola	endoplasmic reticulum	19.53	16.98

Protein Annotations

EnsemblPlants:CDY57317	EnsemblPlantsGene:GSBRNA2T00020790001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF20	PFAM:PF06075
ProteinID:CDY57317	ProteinID:CDY57317.1	SEG:seg	UniParc:UPI0004EF46EE	UniProt:A0A078J3Y0	MapMan:20.1.5.4.2

Description

BnaA08g20310DBnaA08g20310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3Y0]

Coordinates

chrLK033564:+:11544..13427

Molecular Weight (calculated)

60162.0 Da

IEP (calculated)

10.508

GRAVY (calculated)

-0.621

Length

548 amino acids

Sequence
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKLSDSS HSIYVTLPSD QDDVVLSNKM QLGQFIYVDR LDPGTPVPIV
101: QGARPIPGRH PLLGTPEVSA RGKNENERPR RGSWGQNGDV ASPFVLKSGT WGQNGDVASP FVLKSGTLDF DQCTPVAKQR RFGFGAASPM TRGGVRCSYG
201: GKMGDLRGES PGSVMRKSCV VPRSSKFPRS RSVCDRETTA KMISVSSALL SPFKSSAKKS NSPPPSVRTR RATAAAALME EEREAPKSIS KLASPKNSKV
301: EKLEKSWSLT GRLSTLSKEA MQQRETAQKI ALQALREATV AETVVRHLKT LASLSKSAKP DCPAVCFEKF LEFHKQISET MREISSIEAA VLSASENNKS
401: EDRSTSLILN EIQHNSIDQE KTATKRRTTT SLKQQQNHKQ LRSNDENKNP SAPPPPSSGL GNTARLAKET EKEAANWFME FIDKALEKGM KKCKDTGDAD
501: VKKVPQSLIL QVVNWVEAEQ SADNNTRRQL HPRASQITRK LRIKMKNP

Best Arabidopsis Sequence Match ( AT1G23790.1 )
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP

Arabidopsis Description

At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.