CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01127	Canola	mitochondrion	87.31	90.63
CDY69222	Canola	mitochondrion, plastid	52.6	81.13
CDY43695	Canola	mitochondrion	82.26	81.02
AT4G13370.1	Thale cress	endoplasmic reticulum, mitochondrion	82.72	80.39
VIT_11s0016g04380.t01	Wine grape	plastid	61.16	56.34
KRH03797	Soybean	mitochondrion	57.03	52.98
Solyc12g007020.1.1	Tomato	mitochondrion	55.2	52.7
PGSC0003DMT400001026	Potato	mitochondrion	55.2	52.47
KRH56681	Soybean	vacuole	57.03	45.38
GSMUA_Achr7P21900_001	Banana	mitochondrion	45.11	42.88
TraesCS4B01G123300.1	Wheat	mitochondrion	43.73	40.74
Os11t0120200-01	Rice	cytosol, mitochondrion, nucleus	43.88	40.54
Os12t0120000-01	Rice	cytosol, mitochondrion, nucleus	43.88	40.54
TraesCS4A01G192100.1	Wheat	mitochondrion	43.73	40.4
CDY05811	Canola	cytosol	7.95	40.31
GSMUA_Achr4P10330_001	Banana	mitochondrion	44.8	40.19
HORVU4Hr1G024210.1	Barley	mitochondrion	43.27	39.8
TraesCS4D01G121400.1	Wheat	mitochondrion	43.58	39.47
CDX91320	Canola	extracellular	5.96	39.0
EES09151	Sorghum	cytosol, mitochondrion, plastid	41.74	37.71
HORVU4Hr1G024120.1	Barley	plastid	43.27	37.34
Zm00001d052368_P001	Maize	cytosol, mitochondrion, plastid	41.13	36.8
CDY52268	Canola	mitochondrion	23.85	30.77
CDX97548	Canola	mitochondrion	23.55	30.37
CDY08643	Canola	mitochondrion, nucleus	5.5	29.27
CDY69908	Canola	plastid	5.2	28.81
CDY06329	Canola	extracellular, nucleus, peroxisome	25.38	26.56
CDY22665	Canola	extracellular, nucleus, peroxisome	25.38	26.43
CDX93540	Canola	extracellular, nucleus, vacuole	28.29	25.14
CDY61547	Canola	nucleus	19.42	24.9
CDX95036	Canola	extracellular, nucleus, vacuole	27.98	24.9
CDY60513	Canola	plastid	20.03	24.17
CDX91723	Canola	nucleus	19.72	24.16
CDY47633	Canola	nucleus	18.81	23.75
CDY57317	Canola	nucleus	19.88	23.72
CDY42075	Canola	plastid	19.72	23.58
CDX82287	Canola	endoplasmic reticulum	21.56	22.42
CDY22966	Canola	endoplasmic reticulum	21.25	22.06

Protein Annotations

EnsemblPlants:CDY64935	EnsemblPlantsGene:GSBRNA2T00043878001	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF3
PFAM:PF06075	ProteinID:CDY64935	ProteinID:CDY64935.1	SEG:seg	UniParc:UPI0004EF144F	UniProt:A0A078JEQ4
MapMan:20.1.5.4.2	:	:	:	:	:

Description

BnaCnng45570DBnaCnng45570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEQ4]

Coordinates

chrLK034603:-:2713..5077

Molecular Weight (calculated)

71455.6 Da

IEP (calculated)

10.093

GRAVY (calculated)

-0.473

Length

654 amino acids

Sequence
(BLAST)

001: MASLTRGILL KLLQCMNSNT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FFVQISDSLN STYVSLSERD TDLILTNRLQ LGQFIYLERL EFSTPVPRAA
101: GIRPVAGRHA FVGTPEPLIA RVSPGSKRDF VIQPVSASEY SLDPIAVYLN NKRFDDDDDV AVAPNGRPAL APVNQNEENR SQIRNQKPKQ TPQRFSSPAS
201: AKQRSVSSGK KNSSGTVERN PSPAVSGKAR RSASPVPSKC VVPSLAAARE ESRKVVREQP SIVVPSRYRQ PSPNGRKVNP SPSGRRLSIS PGRRLSSGKK
301: MAVIPKVSEA LVGSSAKHGN RKNWDEPDGN AQTADGNAQT EQKDKGTILR TQAAISRRLS DANRRKSDSS ACEEKVKSCS SESSLVEEVS DITYHDRKWT
401: DGSVPLDSIS GDLAKLAKEA MQRRNFAAKA AARALEEANA NECIIRCLSK FSELSSAAKV GNPLLVISQF LVIYEDVVKY SQIVNSITSE DKRNPISLWV
501: EAALATNLDV VSLVKSQNNL ESRLKKSTTT RLSPGCSTKT DNIVGMWTEV EGMKETAKFA VNVKSEMQMW FIGFVEESLD KKNAAVQPLD GSSVAAVLSH
601: LKQVNEWLDR VVSDQDNQIT TMPLTDKIER LKRKIYGFVI HHVGSTYDNS ASAS

Best Arabidopsis Sequence Match ( AT4G13370.1 )
(BLAST)

001: MASLAPGILL KLLQCMNSGT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVSLSERD TDLILSNRLQ LGQFIYLERL EFATPVPRAA
101: GIRPVAGRHA FVGKPEPLIA RVSNGSKRDF VIQPVSDSEY SLDPIAVYLN NRRIDDDGDS DVKPNVRQAL APVNQNEENR NQIRNQKPKT TPQRFSSPAS
201: SKRSVSSGKK NCSGAVAVTV ERDPSPVVSG KGRRSASPVP SKCVVPSLAA AREENRKVAR EPSIVVPSRY RQPSPNGRKM NPSPSGRRMS ISPGRRLSSG
301: LKMTPMVGDS SGKKKMAVIA AGISKVSEAL VGSSAKNGNR KNWEEPLAGD GSAKNKPDHQ AILRTQAAMT RRLSDANRRK SGSSSSVCEE KAKSCSSESS
401: LLEEVSAFEG LGITYHERKW TDGSVPLDSI SDELAKLGKE AMKRRDFAAK AAARALEEAN ANECIIRCLS KFSELSSASK VGNPLRIINE FLKIYEDVMK
501: YSKIASENSF SLSSDQQNPI SLWVEAALAT NLEVVSLVKS HESPSSLKKS MPTRLSPRPS SKTDNIVGMW TDLDGLKETA KFAVNLQSEM QVWFIEFVEE
601: SLDNKNAAKR SLDGSSIAAV LSQLKQVNEW LDRVSSNQEN KITTMDKIER LKRKIYGFVI HHVGSTYDNS ASS

Arabidopsis Description

At4g13370 [Source:UniProtKB/TrEMBL;Acc:Q9T0K8]
SUBAcon: [mitochondrion,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.