Factsheet for PGSC0003DMT400001026

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007020.1.1	Tomato	mitochondrion	95.2	95.62
VIT_11s0016g04380.t01	Wine grape	plastid	64.24	62.25
KRH03797	Soybean	mitochondrion	60.47	59.09
CDY69222	Canola	mitochondrion, plastid	35.9	58.25
AT4G13370.1	Thale cress	endoplasmic reticulum, mitochondrion	55.38	56.61
Bra034878.1-P	Field mustard	mitochondrion	53.05	55.9
CDY64935	Canola	mitochondrion	52.47	55.2
Bra032701.1-P	Field mustard	mitochondrion	50.15	54.76
CDY01127	Canola	mitochondrion	50.0	54.6
CDY43695	Canola	mitochondrion	52.33	54.22
KRH56681	Soybean	vacuole	59.88	50.12
GSMUA_Achr7P21900_001	Banana	mitochondrion	48.69	48.69
GSMUA_Achr4P10330_001	Banana	mitochondrion	49.85	47.05
Os11t0120200-01	Rice	cytosol, mitochondrion, nucleus	44.77	43.5
Os12t0120000-01	Rice	cytosol, mitochondrion, nucleus	44.62	43.36
TraesCS4B01G123300.1	Wheat	mitochondrion	43.75	42.88
TraesCS4A01G192100.1	Wheat	mitochondrion	43.75	42.51
HORVU4Hr1G024210.1	Barley	mitochondrion	43.46	42.05
TraesCS4D01G121400.1	Wheat	mitochondrion	43.6	41.55
EES09151	Sorghum	cytosol, mitochondrion, plastid	43.02	40.88
HORVU4Hr1G024120.1	Barley	plastid	43.46	39.45
Zm00001d052368_P001	Maize	cytosol, mitochondrion, plastid	41.86	39.4
PGSC0003DMT400074262	Potato	cytosol	22.24	29.42
PGSC0003DMT400058976	Potato	mitochondrion	20.93	27.8
PGSC0003DMT400079598	Potato	mitochondrion	20.78	23.99
PGSC0003DMT400008388	Potato	cytosol	21.22	22.29
PGSC0003DMT400066158	Potato	nucleus	19.91	20.98
PGSC0003DMT400079932	Potato	cytosol	18.17	20.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400001026	EnsemblPlantsGene:PGSC0003DMG400000381	EntrezGene:102590897	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008017
InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF3	PFAM:PF06075	PGSC:PGSC0003DMG400000381
RefSeq:XP_006353453.1	SEG:seg	UniParc:UPI00029559A3	UniProt:M0ZHR5	MapMan:20.1.5.4.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000381]

Coordinates

chr12:-:4640873..4644795

Molecular Weight (calculated)

74347.7 Da

IEP (calculated)

10.136

GRAVY (calculated)

-0.372

Length

688 amino acids

Sequence
(BLAST)

001: MATLTPGILL KLLQSMNTGA RVTGDHRTPL LQVIGIVPAL STSDSLWPHN GFFVQLSDSL NSTYVSLSER DTDLILTNRL QLGQFVHVDR FCFDSPPVPR
101: AVNIRSIAGR HGFIGSPEPL IARISGGGFL IQPVSDSDPI AAYLSKNGRT ETGSGPGLKD GKEKLRVREV LAPKENVEIK EDSSKNCSAP KRFSSPASVK
201: QRSISAGKKN LVAERDPSPS GKVKRSASPA PSKSVVPSLV AAKEENRRTS KEPAIIVPSR YRQPSPTSGR RQASPSVARR MSLSPGRRLS SGLKVSPAVD
301: SSGKKKMTSI AAGISKVSEA IVGSGKSSRK SWDEGPANSG DSLEQTEKIF SKKKPDIQAI LRTQAAISRR LSDVSCHAED FGSEGKLKSG AVENSPDAGK
401: PSNEAPVIPV HEKKWTDGSV PLHSVSSELA KLGKEAMQRR IIASTAAAEA LEEALAIETI VRNLSMFADL RSTSNPKNPL PTIDCFMSIY EDVVKSTCVA
501: ESITSNRGVQ KSNENMTMME QPKSSLLWVE AALATDLEIV SLLTNQNSGT QSASVKSSPI YQSTKPSNKN PLMVSAVTGF WTRGNGMNET VELAKKLQSE
601: MQMWFITFVE ESLDAGFRVF KNCSLASDGA SSNCDSIQAI LSQLKRVNNW LDRVVSKKDE QLIQKIECLR RKIYGFVIQH VGTTAENS

Best Arabidopsis Sequence Match ( AT4G13370.1 )
(BLAST)

001: MASLAPGILL KLLQCMNSGT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVSLSERD TDLILSNRLQ LGQFIYLERL EFATPVPRAA
101: GIRPVAGRHA FVGKPEPLIA RVSNGSKRDF VIQPVSDSEY SLDPIAVYLN NRRIDDDGDS DVKPNVRQAL APVNQNEENR NQIRNQKPKT TPQRFSSPAS
201: SKRSVSSGKK NCSGAVAVTV ERDPSPVVSG KGRRSASPVP SKCVVPSLAA AREENRKVAR EPSIVVPSRY RQPSPNGRKM NPSPSGRRMS ISPGRRLSSG
301: LKMTPMVGDS SGKKKMAVIA AGISKVSEAL VGSSAKNGNR KNWEEPLAGD GSAKNKPDHQ AILRTQAAMT RRLSDANRRK SGSSSSVCEE KAKSCSSESS
401: LLEEVSAFEG LGITYHERKW TDGSVPLDSI SDELAKLGKE AMKRRDFAAK AAARALEEAN ANECIIRCLS KFSELSSASK VGNPLRIINE FLKIYEDVMK
501: YSKIASENSF SLSSDQQNPI SLWVEAALAT NLEVVSLVKS HESPSSLKKS MPTRLSPRPS SKTDNIVGMW TDLDGLKETA KFAVNLQSEM QVWFIEFVEE
601: SLDNKNAAKR SLDGSSIAAV LSQLKQVNEW LDRVSSNQEN KITTMDKIER LKRKIYGFVI HHVGSTYDNS ASS

Arabidopsis Description

At4g13370 [Source:UniProtKB/TrEMBL;Acc:Q9T0K8]
SUBAcon: [mitochondrion,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.