CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032701.1-P	Field mustard	mitochondrion	95.56	95.56
CDY64935	Canola	mitochondrion	90.63	87.31
AT4G13370.1	Thale cress	endoplasmic reticulum, mitochondrion	80.63	75.48
CDY43695	Canola	mitochondrion	79.05	75.0
CDY69222	Canola	mitochondrion, plastid	49.37	73.35
VIT_11s0016g04380.t01	Wine grape	plastid	60.48	53.66
KRH03797	Soybean	mitochondrion	57.78	51.7
Solyc12g007020.1.1	Tomato	mitochondrion	54.6	50.22
PGSC0003DMT400001026	Potato	mitochondrion	54.6	50.0
KRH56681	Soybean	vacuole	57.78	44.28
GSMUA_Achr7P21900_001	Banana	mitochondrion	45.87	42.01
TraesCS4B01G123300.1	Wheat	mitochondrion	44.6	40.03
Os11t0120200-01	Rice	cytosol, mitochondrion, nucleus	44.76	39.83
Os12t0120000-01	Rice	cytosol, mitochondrion, nucleus	44.76	39.83
TraesCS4A01G192100.1	Wheat	mitochondrion	44.76	39.83
GSMUA_Achr4P10330_001	Banana	mitochondrion	45.71	39.51
HORVU4Hr1G024210.1	Barley	mitochondrion	44.29	39.24
TraesCS4D01G121400.1	Wheat	mitochondrion	44.44	38.78
EES09151	Sorghum	cytosol, mitochondrion, plastid	43.33	37.71
HORVU4Hr1G024120.1	Barley	plastid	44.29	36.81
Zm00001d052368_P001	Maize	cytosol, mitochondrion, plastid	42.38	36.53
CDY05811	Canola	cytosol	7.46	36.43
CDX91320	Canola	extracellular	5.08	32.0
CDY52268	Canola	mitochondrion	23.17	28.8
CDX97548	Canola	mitochondrion	22.86	28.4
CDY22665	Canola	extracellular, nucleus, peroxisome	25.56	25.64
CDY06329	Canola	extracellular, nucleus, peroxisome	25.4	25.6
CDY08643	Canola	mitochondrion, nucleus	4.76	24.39
CDX93540	Canola	extracellular, nucleus, vacuole	28.1	24.05
CDX95036	Canola	extracellular, nucleus, vacuole	27.78	23.81
CDY61547	Canola	nucleus	18.89	23.33
CDX91723	Canola	nucleus	19.68	23.22
CDY60513	Canola	plastid	19.84	23.06
CDY69908	Canola	plastid	4.29	22.88
CDY42075	Canola	plastid	19.52	22.49
CDY47633	Canola	nucleus	18.41	22.39
CDY57317	Canola	nucleus	19.37	22.26
CDX82287	Canola	endoplasmic reticulum	21.11	21.14
CDY22966	Canola	endoplasmic reticulum	20.95	20.95

Protein Annotations

EnsemblPlants:CDY01127	EnsemblPlantsGene:GSBRNA2T00111193001	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF3
PFAM:PF06075	ProteinID:CDY01127	ProteinID:CDY01127.1	SEG:seg	UniParc:UPI0004EE398B	MapMan:20.1.5.4.2

Description

BnaA04g06920D

Coordinates

chrLK031924:-:266557..268783

Molecular Weight (calculated)

69145.3 Da

IEP (calculated)

10.030

GRAVY (calculated)

-0.460

Length

630 amino acids

Sequence
(BLAST)

001: MASLTGGILL KLLQCMNSNT RPTGEHRSAI LQVTGIVPAL GGSDKGFYVQ ISDSLNSTYV SLSQRDNTHF IHRLQLGQFI YLDRLEFSTP VPRAAGIRPL
101: AGRHAFLGTP EPLIARGSKR DFVIQPVSAS EYSLDPIAVY LNNKRFDDDV AVAPNGRPAL APVNQNNSQI RNQKPKPQRF SSPASAKQRS VERDPSPAVS
201: GKARRSASPV PSKCVVPSLA AAREEESRKV VREQPSIVVP SRYRQPSPNG RKVNPSPSGR RMSISPGRRK KMGVIPKVSE ALVGSSAKHV NRKNWDEPEQ
301: KDKGCDVKNK PHLLAILRTQ AAMSRRLSDA NRRKSVSSAC EEKVKSCSSE TSLVEEVSDI TYHDRKWTDG SVPLPDSISG DLAKLVKEAM QRRNLAAKAA
401: ARALEEANAN ECIIRCLSKF SELSSAPKVG NPLLTISQFL VNYEDVVKYS QIVNSIASED NCRLSSDQQN PISLWVEAAL ATNLDVVSLV KNQNNHESPL
501: TKSTPTRLSP GCSTKTDNIV GMWTEVEGMK ETAKFAVGVK SEMQMWFIGF VEESLDKKNT AVQPLDGSSV AAVLSHLKQV NEWLDRVVSD QDNQITTISL
601: TDKIERLKRK IYGFVIHHVG STYDNSASSS

Best Arabidopsis Sequence Match ( AT4G13370.1 )
(BLAST)

001: MASLAPGILL KLLQCMNSGT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVSLSERD TDLILSNRLQ LGQFIYLERL EFATPVPRAA
101: GIRPVAGRHA FVGKPEPLIA RVSNGSKRDF VIQPVSDSEY SLDPIAVYLN NRRIDDDGDS DVKPNVRQAL APVNQNEENR NQIRNQKPKT TPQRFSSPAS
201: SKRSVSSGKK NCSGAVAVTV ERDPSPVVSG KGRRSASPVP SKCVVPSLAA AREENRKVAR EPSIVVPSRY RQPSPNGRKM NPSPSGRRMS ISPGRRLSSG
301: LKMTPMVGDS SGKKKMAVIA AGISKVSEAL VGSSAKNGNR KNWEEPLAGD GSAKNKPDHQ AILRTQAAMT RRLSDANRRK SGSSSSVCEE KAKSCSSESS
401: LLEEVSAFEG LGITYHERKW TDGSVPLDSI SDELAKLGKE AMKRRDFAAK AAARALEEAN ANECIIRCLS KFSELSSASK VGNPLRIINE FLKIYEDVMK
501: YSKIASENSF SLSSDQQNPI SLWVEAALAT NLEVVSLVKS HESPSSLKKS MPTRLSPRPS SKTDNIVGMW TDLDGLKETA KFAVNLQSEM QVWFIEFVEE
601: SLDNKNAAKR SLDGSSIAAV LSQLKQVNEW LDRVSSNQEN KITTMDKIER LKRKIYGFVI HHVGSTYDNS ASS

Arabidopsis Description

At4g13370 [Source:UniProtKB/TrEMBL;Acc:Q9T0K8]
SUBAcon: [mitochondrion,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.