CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 5
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001755.1-P	Field mustard	nucleus	92.37	97.16
CDY22966	Canola	endoplasmic reticulum	96.18	96.03
AT3G19610.1	Thale cress	vacuole	79.97	78.59
CDY05811	Canola	cytosol	7.47	36.43
CDX91320	Canola	extracellular	5.72	36.0
Solyc10g049800.1.1	Tomato	cytosol	22.58	34.72
PGSC0003DMT400008388	Potato	cytosol	33.86	32.52
PGSC0003DMT400066158	Potato	nucleus	33.39	32.16
Solyc01g107120.2.1	Tomato	cytosol	31.8	30.82
CDY69908	Canola	plastid	5.41	28.81
CDY08643	Canola	mitochondrion, nucleus	5.56	28.46
GSMUA_Achr4P10950_001	Banana	cytosol, mitochondrion, nucleus	25.6	27.52
GSMUA_Achr4P03420_001	Banana	cytosol	24.64	26.18
Os07t0588300-00	Rice	plastid	24.96	24.23
HORVU2Hr1G035200.1	Barley	plastid	14.63	23.71
TraesCS2D01G193600.1	Wheat	plastid	24.32	23.47
TraesCS2B01G212600.1	Wheat	plastid	24.48	23.4
CDY22665	Canola	extracellular, nucleus, peroxisome	23.05	23.09
TraesCS2A01G194300.1	Wheat	plastid	24.01	23.09
Zm00001d006732_P001	Maize	plastid	23.37	22.65
CDY06329	Canola	extracellular, nucleus, peroxisome	22.26	22.4
CDY42075	Canola	plastid	19.4	22.3
CDY52268	Canola	mitochondrion	17.96	22.29
CDX97548	Canola	mitochondrion	17.65	21.89
CDY60513	Canola	plastid	18.76	21.77
KXG36592	Sorghum	plastid	22.73	21.67
CDY64935	Canola	mitochondrion	22.42	21.56
CDX95036	Canola	extracellular, nucleus, vacuole	24.8	21.22
CDY61547	Canola	nucleus	17.17	21.18
CDY01127	Canola	mitochondrion	21.14	21.11
CDX93540	Canola	extracellular, nucleus, vacuole	24.32	20.79
CDY47633	Canola	nucleus	17.01	20.66
CDY43695	Canola	mitochondrion	21.78	20.63
CDY69222	Canola	mitochondrion, plastid	13.67	20.28
CDX91723	Canola	nucleus	17.17	20.22
CDY57317	Canola	nucleus	17.17	19.71

Protein Annotations

EnsemblPlants:CDX82287	EnsemblPlantsGene:GSBRNA2T00137393001	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF12
PFAM:PF06075	ProteinID:CDX82287	ProteinID:CDX82287.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EE65DF
MapMan:20.1.5.4.2	:	:	:	:	:

Description

BnaA03g35340D

Coordinates

chrLK031828:+:416111..418258

Molecular Weight (calculated)

72007.9 Da

IEP (calculated)

9.717

GRAVY (calculated)

-0.664

Length

629 amino acids

Sequence
(BLAST)

001: MHQIEKHTLL SSFYLYLFLL TQISQQPLLI AMAELKSGVL FKLLEEMGVG KARRDVDHRP VLLQIRSIIP VLAAGGLWPN KGFFLRISDS SHSMYASLPR
101: EENDLVLYDK LQIGQLIFVE KLEFAYPVPM IKGIRPTPGR RACTGEPIDL IPKERIEKFC ASLSDTEECY DQQVKRPRRT RWSSSSVSEM NVTDFGLLKN
201: LSSVMEERDD TESMVSNCSS SLSSAARRRS WMGLGDASKR IDSLDPSMVK SHVHDMRLHV SRTRSYPAAS PSPSVRSCGV IEEKSSNRTR RRDIVVSPSP
301: KWAKSLSYGS GSSKSKNLLL PPRSNTLESS DSISRKRSWT ETEILWNSLP PKVANLGKEI LRQRDKAIRA ASQALLEASA AERLLKCLRS YSELSDKRIQ
401: HHQSQQPPIG EFLSFQDELS KSRLIIQSLS TEETKHCNSR TGEERREKAT QWIKSALATD LKPVSLPASK PTQSPARKSF TLIAQETNNR EDNTRERDSG
501: SGERKERLSR AASELRNLVK EEGRRWYLSR VEKYLDEISN VTKWREMSSQ QVGETMYQIK RVSDWLDAMF KGEEEEQEEE EVMMMSESER EACGRVRNKI
601: YRILLRHVEK TSLLSHQRNT NLMSHQQYY

Best Arabidopsis Sequence Match ( AT3G19610.1 )
(BLAST)

001: MQQIEKRSLL CSFLSVFHLI HLQALLLEMA ELRSGVLFKL LEEMGVGKVR RDVDHRPVLL QIRCIIPVLA AGGLWPNKGF FLRITDSTHS IYVSLPREEN
101: DLVLYDKLQI GQLIFVEKLE FAYPVPMIKG IRPTPGRRAC TGDPIDLIPK ERIEKFCVGL SDIEENYDHQ VKKPRRTRWN NSSVSELNFT DLGLSKNLSS
201: VMEEKDDTES MISSCSSSFS SAARRRSWIG SADNRKRRDS LDPSMIKNHD HDTKHVSRAR SSSATSPSLS IRSYGGIEEK SSSRTRRRDV VVSPSPRWSK
301: SLSYGSRSNK SKNLLPPKSN TFESSDPISR KRSWTETEIL WDSLPPKVVN LGKEILRQRD TAIRAASQAL LEASAAERLL KCLRSYSELS DRRNQHQENQ
401: QPPIQDFLSF QDELSKSRLI IQSLSTEKTE HCNANIVKTG DERREKATQW IKSALATDLK LVSLSASKPT QSPGRKGLTL IAQESDNREG NASESNSRLG
501: EIKERLSRAS SELRNWLKEE GRSWYLNRVE KYLDEISNGT KWREMRSEEV GETMYQIKRV SDWLDTIVKG EEDEEEKMVM MMMSESETEA CGRVRNKIYR
601: ILLKHVETTS LLSHQRSTSL MSHHQQQQHE QHLFQKTMSL

Arabidopsis Description

Plant protein of unknown function (DUF936) [Source:TAIR;Acc:AT3G19610]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.