CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034878.1-P	Field mustard	mitochondrion	97.88	63.55
CDY43695	Canola	mitochondrion	92.92	59.34
AT4G13370.1	Thale cress	endoplasmic reticulum, mitochondrion	84.2	53.05
CDY64935	Canola	mitochondrion	81.13	52.6
CDY01127	Canola	mitochondrion	73.35	49.37
CDY05811	Canola	cytosol	12.5	41.09
VIT_11s0016g04380.t01	Wine grape	plastid	65.8	39.3
CDX91320	Canola	extracellular	9.2	39.0
KRH03797	Soybean	mitochondrion	61.08	36.79
PGSC0003DMT400001026	Potato	mitochondrion	58.25	35.9
Solyc12g007020.1.1	Tomato	mitochondrion	57.55	35.62
KRH56681	Soybean	vacuole	60.85	31.39
GSMUA_Achr7P21900_001	Banana	mitochondrion	48.35	29.8
CDY08643	Canola	mitochondrion, nucleus	8.49	29.27
GSMUA_Achr4P10330_001	Banana	mitochondrion	48.82	28.4
CDY69908	Canola	plastid	7.78	27.97
Os12t0120000-01	Rice	cytosol, mitochondrion, nucleus	45.52	27.26
Os11t0120200-01	Rice	cytosol, mitochondrion, nucleus	45.52	27.26
TraesCS4B01G123300.1	Wheat	mitochondrion	44.58	26.92
TraesCS4A01G192100.1	Wheat	mitochondrion	44.34	26.55
HORVU4Hr1G024210.1	Barley	mitochondrion	44.1	26.3
TraesCS4D01G121400.1	Wheat	mitochondrion	44.34	26.04
EES09151	Sorghum	cytosol, mitochondrion, plastid	42.22	24.72
HORVU4Hr1G024120.1	Barley	plastid	44.1	24.67
Zm00001d052368_P001	Maize	cytosol, mitochondrion, plastid	41.98	24.35
CDY52268	Canola	mitochondrion	21.46	17.95
CDY06329	Canola	extracellular, nucleus, peroxisome	26.18	17.76
CDX97548	Canola	mitochondrion	21.23	17.75
CDY22665	Canola	extracellular, nucleus, peroxisome	25.71	17.36
CDY61547	Canola	nucleus	20.75	17.25
CDY47633	Canola	nucleus	20.28	16.6
CDX91723	Canola	nucleus	20.75	16.48
CDY57317	Canola	nucleus	20.75	16.06
CDX95036	Canola	extracellular, nucleus, vacuole	27.36	15.78
CDX93540	Canola	extracellular, nucleus, vacuole	27.36	15.76
CDY60513	Canola	plastid	17.92	14.02
CDY42075	Canola	plastid	17.69	13.71
CDX82287	Canola	endoplasmic reticulum	20.28	13.67
CDY22966	Canola	endoplasmic reticulum	19.81	13.33

Protein Annotations

EnsemblPlants:CDY69222	EnsemblPlantsGene:GSBRNA2T00084230001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF3	PFAM:PF06075
ProteinID:CDY69222	ProteinID:CDY69222.1	SEG:seg	UniParc:UPI0004EDC1FB	UniProt:A0A078JUP0	MapMan:20.1.5.4.2

Description

BnaAnng29710DBnaAnng29710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUP0]

Coordinates

chrLK038900:+:2809..4162

Molecular Weight (calculated)

45810.5 Da

IEP (calculated)

10.410

GRAVY (calculated)

-0.480

Length

424 amino acids

Sequence
(BLAST)

001: MASLAPGILL KLLQCMNSNT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVCLSERD TDLILTNRLQ LGQFIYLERL EFSTPVPRAA
101: GIRPVAGRHA FVGTPEPLIA RGSKRDFVIQ PVPASEYSLD PIAVYLNNKR SDDDDDVTVA PRGRQPLAPV NLNDQKPKRT PQRFSSPASA KQRSVSSGKK
201: HSSERDSSPV VSSKGRRSAS PVPSKCVVPS LAAAREENRK VAREAAIVVP SRYRQPSPNG RRLSISPGRR LSSGLKMAPM VGDSSGKKKM AALAAGISKV
301: SEALVGSSGN RKNWDGNVLP EQKEKSSAKK KTDLQGILRT QAAMTRRLSD ANRRKSDSSA CEEKAKSCSS ASSLVEDEED VSAFEGLGIT YHDRKWTDGS
401: VPLDSISGDL ARLAKVNVTK CFLC

Best Arabidopsis Sequence Match ( AT4G13370.1 )
(BLAST)

001: MASLAPGILL KLLQCMNSGT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVSLSERD TDLILSNRLQ LGQFIYLERL EFATPVPRAA
101: GIRPVAGRHA FVGKPEPLIA RVSNGSKRDF VIQPVSDSEY SLDPIAVYLN NRRIDDDGDS DVKPNVRQAL APVNQNEENR NQIRNQKPKT TPQRFSSPAS
201: SKRSVSSGKK NCSGAVAVTV ERDPSPVVSG KGRRSASPVP SKCVVPSLAA AREENRKVAR EPSIVVPSRY RQPSPNGRKM NPSPSGRRMS ISPGRRLSSG
301: LKMTPMVGDS SGKKKMAVIA AGISKVSEAL VGSSAKNGNR KNWEEPLAGD GSAKNKPDHQ AILRTQAAMT RRLSDANRRK SGSSSSVCEE KAKSCSSESS
401: LLEEVSAFEG LGITYHERKW TDGSVPLDSI SDELAKLGKE AMKRRDFAAK AAARALEEAN ANECIIRCLS KFSELSSASK VGNPLRIINE FLKIYEDVMK
501: YSKIASENSF SLSSDQQNPI SLWVEAALAT NLEVVSLVKS HESPSSLKKS MPTRLSPRPS SKTDNIVGMW TDLDGLKETA KFAVNLQSEM QVWFIEFVEE
601: SLDNKNAAKR SLDGSSIAAV LSQLKQVNEW LDRVSSNQEN KITTMDKIER LKRKIYGFVI HHVGSTYDNS ASS

Arabidopsis Description

At4g13370 [Source:UniProtKB/TrEMBL;Acc:Q9T0K8]
SUBAcon: [mitochondrion,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.