Factsheet for VIT_11s0016g04380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69222	Canola	mitochondrion, plastid	39.3	65.8
KRH03797	Soybean	mitochondrion	65.21	65.77
PGSC0003DMT400001026	Potato	mitochondrion	62.25	64.24
Solyc12g007020.1.1	Tomato	mitochondrion	61.83	64.09
AT4G13370.1	Thale cress	endoplasmic reticulum, mitochondrion	58.45	61.66
CDY64935	Canola	mitochondrion	56.34	61.16
Bra032701.1-P	Field mustard	mitochondrion	54.23	61.11
Bra034878.1-P	Field mustard	mitochondrion	55.92	60.8
CDY01127	Canola	mitochondrion	53.66	60.48
CDY43695	Canola	mitochondrion	55.07	58.89
KRH56681	Soybean	vacuole	65.07	56.2
GSMUA_Achr7P21900_001	Banana	mitochondrion	50.0	51.6
GSMUA_Achr4P10330_001	Banana	mitochondrion	51.41	50.07
Os11t0120200-01	Rice	cytosol, mitochondrion, nucleus	44.65	44.77
Os12t0120000-01	Rice	cytosol, mitochondrion, nucleus	44.37	44.49
TraesCS4B01G123300.1	Wheat	mitochondrion	43.24	43.73
TraesCS4A01G192100.1	Wheat	mitochondrion	43.24	43.36
HORVU4Hr1G024210.1	Barley	mitochondrion	43.1	43.04
EES09151	Sorghum	cytosol, mitochondrion, plastid	43.52	42.68
TraesCS4D01G121400.1	Wheat	mitochondrion	43.38	42.66
Zm00001d052368_P001	Maize	cytosol, mitochondrion, plastid	43.66	42.41
HORVU4Hr1G024120.1	Barley	plastid	43.1	40.37
VIT_09s0002g00760.t01	Wine grape	mitochondrion	24.08	32.33
VIT_13s0320g00010.t01	Wine grape	cytosol	24.93	31.27
VIT_05s0102g01200.t01	Wine grape	endoplasmic reticulum, extracellular, nucleus	31.69	30.45
VIT_01s0026g00030.t01	Wine grape	mitochondrion	21.69	26.01

Protein Annotations

EntrezGene:100245597	wikigene:100245597	MapMan:20.1.5.4.2	ProteinID:CCB51543	ProteinID:CCB51543.1	ncoils:Coil
InterPro:DUF936_pln	UniProt:F6HH47	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008017
EntrezGene:LOC100245597	wikigene:LOC100245597	PFAM:PF06075	PANTHER:PTHR31928	PANTHER:PTHR31928:SF3	UniParc:UPI00019841F1
ArrayExpress:VIT_11s0016g04380	EnsemblPlantsGene:VIT_11s0016g04380	EnsemblPlants:VIT_11s0016g04380.t01	RefSeq:XP_002281524	RefSeq:XP_002281524.1	SEG:seg

Description

No Description!

Coordinates

chr11:+:3684634..3688936

Molecular Weight (calculated)

76772.5 Da

IEP (calculated)

9.882

GRAVY (calculated)

-0.393

Length

710 amino acids

Sequence
(BLAST)

001: MASLTPGILL KLLQSMNSNT KVAGEHRSAL LQVIGIVPAL AGSDLWPNHG FYVQLSDSLN STYVSLSDRD TDLILTNRLQ LGQFVYVDRF DFDSPVPRVC
101: GIRPIAGRHP FVGSPEPLIA RISPSKKDFV IQPVSDWDQS VDPIAAYLSN KKIDDVKNDG KESKIETKGE KGRTRQVLGT RDNNGDLDET KVSDRPQRFS
201: SPAGAKRSVS AGKKNVAVAE RDPSPAGKGK RSASPVPSKC MVPSLVVARE ENRKTSREPA IIVPSRYRQP SPNGRKQASP NARRASISPG RRLSGGLKFS
301: PAVGGAPDST SKKKMATIVA GISKVSEALV GSAKAGRKSW DEPPAAVGSG ELKEKSLAKI KPDVQAILRT QAAISRRLSD VHGRQANQDD SSTNEKTKPN
401: SAEGCLVPEK PTCEAPAITV HEKKWTDGSV PLDTVSSSLA KLGKEAMQRR VLASKAAAEA LEEATATESI IRSLSMFSEL CSKCKVGNPL PTIDRFLSIY
501: DEVMRSTAFA ESVSTCHRSD IPHDSSNSTS LWVEAALATD LGIVSLLTGL NIDSQPTLQK STSKRQALTA PAKNHLKVSS LPASDPTIGS WTRGNGMKET
601: IELAMNLQSE MQMWFVKFVE ESLDAGFRVF RESKADVCSM LPPECGPIAA ILSQLKRVND WLDRVASKQD ELLTEKIERL KRKIYGFVIH HVGTSLDNSS
701: SIPSSCISMS

Best Arabidopsis Sequence Match ( AT4G13370.1 )
(BLAST)

001: MASLAPGILL KLLQCMNSGT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVSLSERD TDLILSNRLQ LGQFIYLERL EFATPVPRAA
101: GIRPVAGRHA FVGKPEPLIA RVSNGSKRDF VIQPVSDSEY SLDPIAVYLN NRRIDDDGDS DVKPNVRQAL APVNQNEENR NQIRNQKPKT TPQRFSSPAS
201: SKRSVSSGKK NCSGAVAVTV ERDPSPVVSG KGRRSASPVP SKCVVPSLAA AREENRKVAR EPSIVVPSRY RQPSPNGRKM NPSPSGRRMS ISPGRRLSSG
301: LKMTPMVGDS SGKKKMAVIA AGISKVSEAL VGSSAKNGNR KNWEEPLAGD GSAKNKPDHQ AILRTQAAMT RRLSDANRRK SGSSSSVCEE KAKSCSSESS
401: LLEEVSAFEG LGITYHERKW TDGSVPLDSI SDELAKLGKE AMKRRDFAAK AAARALEEAN ANECIIRCLS KFSELSSASK VGNPLRIINE FLKIYEDVMK
501: YSKIASENSF SLSSDQQNPI SLWVEAALAT NLEVVSLVKS HESPSSLKKS MPTRLSPRPS SKTDNIVGMW TDLDGLKETA KFAVNLQSEM QVWFIEFVEE
601: SLDNKNAAKR SLDGSSIAAV LSQLKQVNEW LDRVSSNQEN KITTMDKIER LKRKIYGFVI HHVGSTYDNS ASS

Arabidopsis Description

At4g13370 [Source:UniProtKB/TrEMBL;Acc:Q9T0K8]
SUBAcon: [mitochondrion,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.