Factsheet for VIT_09s0002g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69022	Soybean	golgi, mitochondrion	64.84	63.28
KRH47653	Soybean	endoplasmic reticulum, nucleus, peroxisome	61.63	60.93
KRH06232	Soybean	nucleus	59.92	59.36
PGSC0003DMT400058976	Potato	mitochondrion	55.58	56.76
Solyc03g122080.2.1	Tomato	mitochondrion	55.01	56.18
PGSC0003DMT400074262	Potato	cytosol	55.2	56.15
Solyc12g049500.1.1	Tomato	cytosol	51.8	53.94
Zm00001d032126_P001	Maize	cytosol	23.06	52.14
CDY52268	Canola	mitochondrion	49.53	51.68
AT3G14170.2	Thale cress	cytosol, golgi, mitochondrion, nucleus	49.15	51.38
CDX97548	Canola	mitochondrion	49.15	51.28
Bra027368.1-P	Field mustard	mitochondrion	48.96	51.08
Zm00001d038770_P001	Maize	cytosol	23.06	48.8
GSMUA_Achr1P21840_001	Banana	extracellular	48.58	48.04
Zm00001d027907_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome	30.62	44.38
Os03t0181800-01	Rice	cytosol	45.75	42.23
EER95393	Sorghum	cytosol	44.61	41.7
Zm00001d017634_P001	Maize	cytosol	19.47	41.37
HORVU4Hr1G077070.1	Barley	cytosol	44.05	39.49
TraesCS4A01G006800.1	Wheat	cytosol	43.67	39.15
TraesCS4B01G298200.1	Wheat	cytosol	43.67	39.15
TraesCS4D01G297000.1	Wheat	cytosol	43.67	39.15
Zm00001d012110_P001	Maize	nucleus	14.37	30.77
VIT_13s0320g00010.t01	Wine grape	cytosol	29.11	27.21
VIT_05s0102g01200.t01	Wine grape	endoplasmic reticulum, extracellular, nucleus	36.29	25.98
VIT_11s0016g04380.t01	Wine grape	plastid	32.33	24.08
VIT_01s0026g00030.t01	Wine grape	mitochondrion	24.95	22.3

Protein Annotations

ArrayExpress:VIT_09s0002g00760	EMBL:FN596494	EnsemblPlants:VIT_09s0002g00760.t01	EnsemblPlantsGene:VIT_09s0002g00760	EntrezGene:100241213	EntrezGene:LOC100241213
InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF2	PFAM:PF06075	ProteinID:CCB59262
ProteinID:CCB59262.1	RefSeq:XP_002272087	RefSeq:XP_002272087.1	RefSeq:XP_019077901.1	SEG:seg	UniParc:UPI0001983F10
UniProt:F6HXQ5	wikigene:100241213	wikigene:LOC100241213	MapMan:20.1.5.4.2	:	:

Description

No Description!

Coordinates

chr9:+:511540..514411

Molecular Weight (calculated)

57894.8 Da

IEP (calculated)

10.137

GRAVY (calculated)

-0.427

Length

529 amino acids

Sequence
(BLAST)

001: MASLTPGVLL KLLQSINSNI KVRGEYRSVL LQVISIVPAL SGSELWPNHG FFIKVSDSSH STYVSLSKED NELILNNKLQ LGQFFYVDRV EAGTPVPILV
101: GVRPVPGRNP FVGNPKDLMQ MLVPSEGPVQ VDHEGINGSK LSELLEPKEE SPRQKIVIKE EKVVVASRYM QGVLTSNSKV NGVDCNGGGK NNENENGGAG
201: KKVGLLKGRQ QELKGQTRSM TPMRSQQDAL VSKPEVAVSN AKESAVPVKG TTTKRPTSKQ ENINSNCLLN LKDKNHSSEK ISWMSLPANL LKPGKGMLRR
301: RNLASLIAAE AQKEASTAAV LVKCLGMFAN LCSSSSMENP HLSLTKFFTL HQLIDQPNAT TQLKDKSLHL PNNSSPQADK SSKKTGLIHG KSALKSAKPS
401: IELSGTEKLE WAKGDGAKEI KELKEILLNE TQSWFLKFLE GALDAGFRIS TMEKKSKEIV GRRMEPDNHI AVTLSQLKHA NEWLDKLRSK LSSENNELVK
501: TIDRLKQKIY ACLLSHVDSA ASALESRSG

Best Arabidopsis Sequence Match ( AT3G14170.1 )
(BLAST)

001: MASLTPRVLI KLLETMNTNI KVRGEYRSVL LQVISIVPAL AGSELWPNQG FFIKVSDSSH STYVSLSNED NELILNNKLG IGQFFYVDKL DAGTPVPVLV
101: GVRPISGRHP FVGNPKDLMQ MLVPSETTPR EEEYHNQKKK DGARSNIVEN IRKHQPFVIK EEKTGVASRY MKGISNSKAS GSDSSSGGSN NEGETGSIMV
201: AKKVGVLAKG KQREHKDQAR QAGPLQCRPA TAPTKAEPKK LSLSSTVNYI NRKSNSAEDA SWSSLPVSLS KLGKGMLRRR NLAALIAAEV QREALAASHL
301: IKCISMFAEL SSNASPKNPH TSLRNFFTLQ SILDQVQVTV VASKDKSFQP VNIHSLWMEP EKLSKKASLS SSRATMKPSK ALTEAEKLEW VKGNGTEEIK
401: ELTNTLKRET RSWFLKFLED ALDTGLHATV PEKKGKTKGA RLAEPDNHIA ETLSQLKQAN EWLEKVKNDN LSSDNSLLEN IERLKKKIYS CLLLYVDSAA
501: SAIGV

Arabidopsis Description

Plant protein of unknown function (DUF936) [Source:TAIR;Acc:AT3G14170]
SUBAcon: [mitochondrion,golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.