CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027368.1-P	Field mustard	mitochondrion	93.49	93.49
CDX97548	Canola	mitochondrion	93.49	93.49
AT3G14170.2	Thale cress	cytosol, golgi, mitochondrion, nucleus	78.11	78.26
KRG89920	Soybean	extracellular, mitochondrion	23.47	64.32
VIT_09s0002g00760.t01	Wine grape	mitochondrion	51.68	49.53
Zm00001d032126_P001	Maize	cytosol	22.49	48.72
CDY05811	Canola	cytosol	12.23	48.06
PGSC0003DMT400074262	Potato	cytosol	48.13	46.92
PGSC0003DMT400058976	Potato	mitochondrion	47.34	46.33
Solyc03g122080.2.1	Tomato	mitochondrion	47.14	46.14
Zm00001d038770_P001	Maize	cytosol	22.49	45.6
Solyc12g049500.1.1	Tomato	cytosol	45.36	45.28
GSMUA_Achr1P21840_001	Banana	extracellular	44.58	42.24
Zm00001d027907_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome	29.59	41.1
Zm00001d017634_P001	Maize	cytosol	19.33	39.36
CDX91320	Canola	extracellular	7.69	39.0
EER95393	Sorghum	cytosol	43.2	38.69
Os03t0181800-01	Rice	cytosol	42.21	37.35
TraesCS4A01G006800.1	Wheat	cytosol	42.6	36.61
CDY08643	Canola	mitochondrion, nucleus	8.88	36.59
TraesCS4D01G297000.1	Wheat	cytosol	42.41	36.44
HORVU4Hr1G077070.1	Barley	cytosol	42.21	36.27
TraesCS4B01G298200.1	Wheat	cytosol	42.01	36.1
Zm00001d012110_P001	Maize	nucleus	13.61	27.94
CDY06329	Canola	extracellular, nucleus, peroxisome	32.74	26.56
CDY69908	Canola	plastid	6.11	26.27
CDY22665	Canola	extracellular, nucleus, peroxisome	31.76	25.64
CDX93540	Canola	extracellular, nucleus, vacuole	34.71	23.91
CDY64935	Canola	mitochondrion	30.77	23.85
CDX95036	Canola	extracellular, nucleus, vacuole	34.32	23.67
CDY01127	Canola	mitochondrion	28.8	23.17
CDY43695	Canola	mitochondrion	29.39	22.44
CDY69222	Canola	mitochondrion, plastid	17.95	21.46
CDY61547	Canola	nucleus	21.3	21.18
CDY42075	Canola	plastid	22.68	21.02
CDY47633	Canola	nucleus	21.3	20.85
CDY60513	Canola	plastid	22.09	20.66
CDX91723	Canola	nucleus	21.5	20.41
CDY57317	Canola	nucleus	21.7	20.07
CDX82287	Canola	endoplasmic reticulum	22.29	17.96
CDY22966	Canola	endoplasmic reticulum	22.29	17.94

Protein Annotations

EnsemblPlants:CDY52268	EnsemblPlantsGene:GSBRNA2T00005255001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF2	PFAM:PF06075
ProteinID:CDY52268	ProteinID:CDY52268.1	SEG:seg	UniParc:UPI0004EC3261	UniProt:A0A078IT87	MapMan:20.1.5.4.2

Description

BnaC05g52120DBnaC05g52120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT87]

Coordinates

chrLK033072:-:45655..47421

Molecular Weight (calculated)

55874.6 Da

IEP (calculated)

10.259

GRAVY (calculated)

-0.570

Length

507 amino acids

Sequence
(BLAST)

001: MASLTPRVLI KLLQTMNTNI KVRGEYRSVL LQVISIVPAL AGSELWPNQG FFIKVSDSSH STYVSLRNED NELILNNKLG LGQFFYVDKL EPGTPVPVMV
101: GVRPISGRHP FVGNPKDLMQ MLVPTETTTT PPMQEDNHKQ KKDGARSNAV ESLRRRQDFV IKEEKTGVAS RYMQGVSNAR VSGSDSSSGG SNNESEAGSV
201: KASKRVGGLA KGKQREHKDQ VRQACPPQSQ SRPATAPTKA EQKINHINRK SNSSEDASWR SLPANLTKMG KGMLRRRNIA VLLAAEAQRD ALAASHLLKC
301: INMFADLSSS ASPKNPHTSL RSFFNLQSLL DQAQLTAAPS KEKPLQLLNI HPVCTEPEKL SKRASLASSR ATTKSSKTLT EAEKLEWVTG NGTKEIKAMR
401: DTMTQETRSW FMRFLEEAID TGFHASVQVK KGKTKGSRAE EPDNHIAETL SQLKQANEWL DKVKSDHHSS DDDSLLENIE RLKKKIYSCL LLYVDSAASA
501: IAVSTSS

Best Arabidopsis Sequence Match ( AT3G14170.1 )
(BLAST)

001: MASLTPRVLI KLLETMNTNI KVRGEYRSVL LQVISIVPAL AGSELWPNQG FFIKVSDSSH STYVSLSNED NELILNNKLG IGQFFYVDKL DAGTPVPVLV
101: GVRPISGRHP FVGNPKDLMQ MLVPSETTPR EEEYHNQKKK DGARSNIVEN IRKHQPFVIK EEKTGVASRY MKGISNSKAS GSDSSSGGSN NEGETGSIMV
201: AKKVGVLAKG KQREHKDQAR QAGPLQCRPA TAPTKAEPKK LSLSSTVNYI NRKSNSAEDA SWSSLPVSLS KLGKGMLRRR NLAALIAAEV QREALAASHL
301: IKCISMFAEL SSNASPKNPH TSLRNFFTLQ SILDQVQVTV VASKDKSFQP VNIHSLWMEP EKLSKKASLS SSRATMKPSK ALTEAEKLEW VKGNGTEEIK
401: ELTNTLKRET RSWFLKFLED ALDTGLHATV PEKKGKTKGA RLAEPDNHIA ETLSQLKQAN EWLEKVKNDN LSSDNSLLEN IERLKKKIYS CLLLYVDSAA
501: SAIGV

Arabidopsis Description

Plant protein of unknown function (DUF936) [Source:TAIR;Acc:AT3G14170]
SUBAcon: [mitochondrion,golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.