CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005615.1-P	Field mustard	plastid	98.9	98.9
CDY60513	Canola	plastid	88.85	89.67
AT2G31920.1	Thale cress	plastid	78.06	72.99
VIT_13s0320g00010.t01	Wine grape	cytosol	38.94	37.63
KRH43579	Soybean	plastid	36.93	35.5
KRH13842	Soybean	plastid	36.01	34.93
Solyc01g081640.2.1	Tomato	cytosol	35.83	31.26
PGSC0003DMT400079932	Potato	cytosol	33.82	30.94
CDY05811	Canola	cytosol	6.95	29.46
CDX91320	Canola	extracellular	5.12	28.0
CDY08643	Canola	mitochondrion, nucleus	5.48	24.39
CDY06329	Canola	extracellular, nucleus, peroxisome	26.33	23.04
CDY22665	Canola	extracellular, nucleus, peroxisome	26.14	22.77
CDY52268	Canola	mitochondrion	21.02	22.68
CDX97548	Canola	mitochondrion	20.84	22.49
CDX93540	Canola	extracellular, nucleus, vacuole	28.88	21.47
CDX95036	Canola	extracellular, nucleus, vacuole	28.34	21.09
CDY43695	Canola	mitochondrion	23.95	19.73
CDY64935	Canola	mitochondrion	23.58	19.72
CDY61547	Canola	nucleus	18.28	19.61
CDY01127	Canola	mitochondrion	22.49	19.52
CDY47633	Canola	nucleus	18.46	19.5
CDX82287	Canola	endoplasmic reticulum	22.3	19.4
CDX91723	Canola	nucleus	18.83	19.29
CDY22966	Canola	endoplasmic reticulum	22.12	19.21
CDY69908	Canola	plastid	4.02	18.64
CDY57317	Canola	nucleus	18.46	18.43
CDY69222	Canola	mitochondrion, plastid	13.71	17.69

Protein Annotations

EnsemblPlants:CDY42075	EnsemblPlantsGene:GSBRNA2T00074115001	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF7
PFAM:PF06075	ProteinID:CDY42075	ProteinID:CDY42075.1	SEG:seg	UniParc:UPI0004EDD5A7	UniProt:A0A078HUA5
MapMan:20.1.5.4.2	:	:	:	:	:

Description

BnaA05g11110DBnaA05g11110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUA5]

Coordinates

chrLK032514:-:71268..73372

Molecular Weight (calculated)

60597.6 Da

IEP (calculated)

10.309

GRAVY (calculated)

-0.397

Length

547 amino acids

Sequence
(BLAST)

001: MASLTPGVLS NLLELAAGKV ISSSSSPPLL SSHRFPLLQV IEIVPCLSDN QWRSERFFVK VSDSLHAAYV AVSAADDADL IRSDEIQLGQ FVYVRGGFHV
101: EKGCPVPVVR GLKPVSKRRT CVGNPSDLVS SDLLLDFTPV SVDTTKKKRN LGGDTRRLSL DSARRSCWDH TSPPVTRRRD AALLLSSSPR LKPKLVLSDK
201: NLPKNESPSK HLNCETPTLR NRNVVKPASP ISIVKSPKDG IKPLSKAVTP TVAYYKLPSS HRTWSDQRIS WTGLPKTIQV LGKEVSTNRQ VAVKAAVKAL
301: EEASTMESVL LSLQSFAELC DSSKHLSAGQ VVRRFLDIYH STLNTCKAIH LLLTQNRNNG SCRSAAMKNA AAWVQDAVVT GFSQFNLFKE PGKQDEAASP
401: RDQHHYIVIH NSSEKLNPKE TTSPRNQSYK GVKLTSTKHR SVSSERSNVE GKNRLKESLS LADELLRVSS QWFLKYLENS LKKGSFLVKK EEANGKESLV
501: GHLKAVNCWL DDLISNRGEV SEKVEDLRKK LQRFLLRHIE SAIGETM

Best Arabidopsis Sequence Match ( AT2G31920.1 )
(BLAST)

001: MASLTPGVLS NLLNIAAGNS PSSPPLLSSH RSPLLQVIEI VPCLSDDQWR SEAFFVKVSD SLHAAYVAVS TGDDADLIRS DEIQLGQFIY ICGGLHVEKG
101: CPVPVIRGLK PVPKRRMCVG NPSDLYSSDL LLPFTQVSVS PTTTKKKNLV ETRRLSLDSA RRSCWDQTPP VTRRRDAALL LSSPRLKSKL VLNDKSLLKI
201: ESPSKYFNCG TSPALRNKNV VKPGSPISMA SSPKDGIKSP ISKHLNCETP ALRSRYVVKP ASPISVTRSP KDGIKSLSKA VTPPVALFKV PSSHMTWSDQ
301: RMSWSGLPKT IQLLGKEVSS HRQVAVSAAV SALEEASAME SVLFSLQAFA ELCDSTKKLS TGQVVARFLD IYHNTQNTCK AVHRLLTQNR NNGSCRLVVN
401: KNATSWVQAA VVTGFSQFNL FKEPGKKGDA ADHHYIVMQN SSEKLNPKET TSSRTPSYKG AKPPATKHCS VSDRSSLEGK SSLKDSTSLA DELVQVSSQW
501: FLKYLENSLN KGSFLVKTEE TNGKESLLVH LKALNHWLDD LNLNRTETNE KVEDLRKKLQ RFLLEHIESV IGDTYNMKRK IINSI

Arabidopsis Description

Elongation factor 1-delta, putative (DUF936) [Source:UniProtKB/TrEMBL;Acc:Q9SKA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.