Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079932 | Potato | cytosol | 89.31 | 93.65 |
| VIT_13s0320g00010.t01 | Wine grape | cytosol | 50.4 | 55.83 |
| KRH43579 | Soybean | plastid | 39.71 | 43.76 |
| KRH13842 | Soybean | plastid | 38.6 | 42.91 |
| CDY60513 | Canola | plastid | 32.54 | 37.64 |
| AT2G31920.1 | Thale cress | plastid | 33.65 | 36.07 |
| Bra005615.1-P | Field mustard | plastid | 31.26 | 35.83 |
| CDY42075 | Canola | plastid | 31.26 | 35.83 |
| Solyc03g122080.2.1 | Tomato | mitochondrion | 23.29 | 28.19 |
| Solyc12g049500.1.1 | Tomato | cytosol | 22.17 | 27.36 |
| Solyc06g073110.2.1 | Tomato | endoplasmic reticulum, extracellular, nucleus | 29.35 | 24.63 |
| Solyc10g049800.1.1 | Tomato | cytosol | 15.15 | 23.23 |
| Solyc05g005580.2.1 | Tomato | mitochondrion | 22.01 | 23.15 |
| Solyc12g007020.1.1 | Tomato | mitochondrion | 22.97 | 21.02 |
| Solyc01g107120.2.1 | Tomato | cytosol | 21.53 | 20.8 |
Protein Annotations
| EnsemblPlants:Solyc01g081640.2.1 | EnsemblPlantsGene:Solyc01g081640.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008017 |
| InterPro:DUF936_pln | PANTHER:PTHR31928 | PANTHER:PTHR31928:SF7 | PFAM:PF06075 | SEG:seg | UniParc:UPI0002762D68 |
| UniProt:K4AY56 | MapMan:20.1.5.4.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:80831465..80835364
Molecular Weight (calculated)
69241.6 Da
IEP (calculated)
10.253
GRAVY (calculated)
-0.543
Length
627 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLTPGILL KLLQHLDDKE TKVAGQHRSA LLQVISIVPS LDDDPWKSRG FYLRVSDSQH SAYVSVSEQD IELILSDKIQ LGQFIHVTRL DSGSPVPVLR
101: GLKPVPNRRP CVGDPKDLIS SDFLTARNRP DPKRGKKNGE VKRVEVKTKI NRVVLSEDVK SRRQSIGNGK VDGLEMRRLS FDSVRRGWDR SPGEKNGAGA
201: TPRSKSKTGF PGSDSLPSVK KPSLDKVSTP RHSTASISPL TSRNNIVSPR SVSKPTRKDV ELIVSPRSVS KPTRKNLELI VSPRAVSKSA RKDLELSQDK
301: TLPCNLTKVA LSFKNWSDSR ISWSSLPSTV RDLGKEVTSS RNVAFLSAMH ALEEAAAAEG VIQCMSMFAE LCESSKKVPA GQLIEQFLNL HQNMQKAASL
401: TKSLVMRTPE AKGNDKLCLQ DPFPEICHNF TNKNAASWIQ AAIDSELSKF CLFTKEDKNG NLDNEKSHHI ILESTPKISE AENHSPVNKQ STKANGLSGP
501: NSSRRSSVSK PKQHLPATTR RTNIEREEWS EGSGVKEAAN LAEKLLSSSR AWFLNFLEDA LSKGFGLDTV DGNSEIVDLL GQLKSVNQWL DDMLKLGNRI
601: DERVEGLKQK LYRFLLDHVD SSILGGK
101: GLKPVPNRRP CVGDPKDLIS SDFLTARNRP DPKRGKKNGE VKRVEVKTKI NRVVLSEDVK SRRQSIGNGK VDGLEMRRLS FDSVRRGWDR SPGEKNGAGA
201: TPRSKSKTGF PGSDSLPSVK KPSLDKVSTP RHSTASISPL TSRNNIVSPR SVSKPTRKDV ELIVSPRSVS KPTRKNLELI VSPRAVSKSA RKDLELSQDK
301: TLPCNLTKVA LSFKNWSDSR ISWSSLPSTV RDLGKEVTSS RNVAFLSAMH ALEEAAAAEG VIQCMSMFAE LCESSKKVPA GQLIEQFLNL HQNMQKAASL
401: TKSLVMRTPE AKGNDKLCLQ DPFPEICHNF TNKNAASWIQ AAIDSELSKF CLFTKEDKNG NLDNEKSHHI ILESTPKISE AENHSPVNKQ STKANGLSGP
501: NSSRRSSVSK PKQHLPATTR RTNIEREEWS EGSGVKEAAN LAEKLLSSSR AWFLNFLEDA LSKGFGLDTV DGNSEIVDLL GQLKSVNQWL DDMLKLGNRI
601: DERVEGLKQK LYRFLLDHVD SSILGGK
001: MASLTPGVLS NLLNIAAGNS PSSPPLLSSH RSPLLQVIEI VPCLSDDQWR SEAFFVKVSD SLHAAYVAVS TGDDADLIRS DEIQLGQFIY ICGGLHVEKG
101: CPVPVIRGLK PVPKRRMCVG NPSDLYSSDL LLPFTQVSVS PTTTKKKNLV ETRRLSLDSA RRSCWDQTPP VTRRRDAALL LSSPRLKSKL VLNDKSLLKI
201: ESPSKYFNCG TSPALRNKNV VKPGSPISMA SSPKDGIKSP ISKHLNCETP ALRSRYVVKP ASPISVTRSP KDGIKSLSKA VTPPVALFKV PSSHMTWSDQ
301: RMSWSGLPKT IQLLGKEVSS HRQVAVSAAV SALEEASAME SVLFSLQAFA ELCDSTKKLS TGQVVARFLD IYHNTQNTCK AVHRLLTQNR NNGSCRLVVN
401: KNATSWVQAA VVTGFSQFNL FKEPGKKGDA ADHHYIVMQN SSEKLNPKET TSSRTPSYKG AKPPATKHCS VSDRSSLEGK SSLKDSTSLA DELVQVSSQW
501: FLKYLENSLN KGSFLVKTEE TNGKESLLVH LKALNHWLDD LNLNRTETNE KVEDLRKKLQ RFLLEHIESV IGDTYNMKRK IINSI
101: CPVPVIRGLK PVPKRRMCVG NPSDLYSSDL LLPFTQVSVS PTTTKKKNLV ETRRLSLDSA RRSCWDQTPP VTRRRDAALL LSSPRLKSKL VLNDKSLLKI
201: ESPSKYFNCG TSPALRNKNV VKPGSPISMA SSPKDGIKSP ISKHLNCETP ALRSRYVVKP ASPISVTRSP KDGIKSLSKA VTPPVALFKV PSSHMTWSDQ
301: RMSWSGLPKT IQLLGKEVSS HRQVAVSAAV SALEEASAME SVLFSLQAFA ELCDSTKKLS TGQVVARFLD IYHNTQNTCK AVHRLLTQNR NNGSCRLVVN
401: KNATSWVQAA VVTGFSQFNL FKEPGKKGDA ADHHYIVMQN SSEKLNPKET TSSRTPSYKG AKPPATKHCS VSDRSSLEGK SSLKDSTSLA DELVQVSSQW
501: FLKYLENSLN KGSFLVKTEE TNGKESLLVH LKALNHWLDD LNLNRTETNE KVEDLRKKLQ RFLLEHIESV IGDTYNMKRK IINSI
Arabidopsis Description
Elongation factor 1-delta, putative (DUF936) [Source:UniProtKB/TrEMBL;Acc:Q9SKA8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.