Factsheet for Solyc12g007020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001026	Potato	mitochondrion	95.62	95.2
VIT_11s0016g04380.t01	Wine grape	plastid	64.09	61.83
KRH03797	Soybean	mitochondrion	60.58	58.95
CDY69222	Canola	mitochondrion, plastid	35.62	57.55
AT4G13370.1	Thale cress	endoplasmic reticulum, mitochondrion	54.74	55.72
Bra034878.1-P	Field mustard	mitochondrion	52.99	55.59
CDY64935	Canola	mitochondrion	52.7	55.2
Bra032701.1-P	Field mustard	mitochondrion	50.37	54.76
CDY01127	Canola	mitochondrion	50.22	54.6
CDY43695	Canola	mitochondrion	51.97	53.61
KRH56681	Soybean	vacuole	59.71	49.76
GSMUA_Achr7P21900_001	Banana	mitochondrion	48.76	48.55
GSMUA_Achr4P10330_001	Banana	mitochondrion	49.63	46.64
Os11t0120200-01	Rice	cytosol, mitochondrion, nucleus	44.09	42.66
TraesCS4B01G123300.1	Wheat	mitochondrion	43.65	42.59
Os12t0120000-01	Rice	cytosol, mitochondrion, nucleus	43.94	42.51
TraesCS4A01G192100.1	Wheat	mitochondrion	43.65	42.23
HORVU4Hr1G024210.1	Barley	mitochondrion	43.21	41.63
TraesCS4D01G121400.1	Wheat	mitochondrion	43.36	41.14
EES09151	Sorghum	cytosol, mitochondrion, plastid	42.77	40.47
HORVU4Hr1G024120.1	Barley	plastid	43.21	39.05
Zm00001d052368_P001	Maize	cytosol, mitochondrion, plastid	41.61	38.99
Solyc12g049500.1.1	Tomato	cytosol	20.73	27.95
Solyc03g122080.2.1	Tomato	mitochondrion	20.58	27.22
Solyc06g073110.2.1	Tomato	endoplasmic reticulum, extracellular, nucleus	28.03	25.7
Solyc05g005580.2.1	Tomato	mitochondrion	20.73	23.83
Solyc10g049800.1.1	Tomato	cytosol	14.01	23.47
Solyc01g081640.2.1	Tomato	cytosol	21.02	22.97
Solyc01g107120.2.1	Tomato	cytosol	19.42	20.49

Protein Annotations

EnsemblPlants:Solyc12g007020.1.1	EnsemblPlantsGene:Solyc12g007020.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008017	InterPro:DUF936_pln
ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF3	PFAM:PF06075	SEG:seg	UniParc:UPI000276AAE3
UniProt:K4DBN9	MapMan:20.1.5.4.2	:	:	:	:

Description

No Description!

Coordinates

chr12:+:1459084..1462279

Molecular Weight (calculated)

74067.3 Da

IEP (calculated)

10.258

GRAVY (calculated)

-0.402

Length

685 amino acids

Sequence
(BLAST)

001: MATLTPGILL KLLQSMNTGA RVTGDHRTPL LQVIGIVPAL STSDSLWPHN GFFVQLSDSL NSTYVSLSER DTDLILTNRL QLGQFVHVDR FCFDSPPVPR
101: AVNIRSIAGR HGFIGSPEPL IARISGGGFL IQPVTDSDPI AAYLSKNGRT ETGSGPGLKD GKEKLRVREV LAPKENVEMK EDLSKNCSAP KRFSSPASVK
201: QRSVSAGKKN LVAERDPSPA GKVKRSASPV PSKSVVPSLV AAKEENRRTS KEPAIIVPSR YRQPSPTSGR RQASPLVARR MSLSPGRRLS GGLKVSPAAD
301: SSGKKKMTTI ASGISKVSEA IAGSGKSSRK SWDEGPANSG DSSEQAEKVF SKKKPDIQAI LRTQAAISRR LSDVSCHAED FGSEGKLKSG AAENSPDTEK
401: SNNAAPVIPV HEKKWTDGSV PLHSVTSELA KLGKEAMQRR ITASTAAAEA LEEALAIETI VRNLSMFADL RSTSNPKNPL PTIDHFMSIY EDVVKSTCVA
501: ESITSNRGVQ KSNENMTTME QPKSSLLWVE AALATDLKIV SLLTNQNSGT QPASVKSSPT YESTKPSNKN PLMVTGFWTR GNGMNETVEL AKKLQSEMQM
601: WFITFVEESL DAGFRVFKNC SLASVGASSN CDSIQAILSQ LKRVNNWLDR VVSKKDEQLI QKIECLRRKI YGFVIQHVGT TAENS

Best Arabidopsis Sequence Match ( AT4G13370.1 )
(BLAST)

001: MASLAPGILL KLLQCMNSGT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVSLSERD TDLILSNRLQ LGQFIYLERL EFATPVPRAA
101: GIRPVAGRHA FVGKPEPLIA RVSNGSKRDF VIQPVSDSEY SLDPIAVYLN NRRIDDDGDS DVKPNVRQAL APVNQNEENR NQIRNQKPKT TPQRFSSPAS
201: SKRSVSSGKK NCSGAVAVTV ERDPSPVVSG KGRRSASPVP SKCVVPSLAA AREENRKVAR EPSIVVPSRY RQPSPNGRKM NPSPSGRRMS ISPGRRLSSG
301: LKMTPMVGDS SGKKKMAVIA AGISKVSEAL VGSSAKNGNR KNWEEPLAGD GSAKNKPDHQ AILRTQAAMT RRLSDANRRK SGSSSSVCEE KAKSCSSESS
401: LLEEVSAFEG LGITYHERKW TDGSVPLDSI SDELAKLGKE AMKRRDFAAK AAARALEEAN ANECIIRCLS KFSELSSASK VGNPLRIINE FLKIYEDVMK
501: YSKIASENSF SLSSDQQNPI SLWVEAALAT NLEVVSLVKS HESPSSLKKS MPTRLSPRPS SKTDNIVGMW TDLDGLKETA KFAVNLQSEM QVWFIEFVEE
601: SLDNKNAAKR SLDGSSIAAV LSQLKQVNEW LDRVSSNQEN KITTMDKIER LKRKIYGFVI HHVGSTYDNS ASS

Arabidopsis Description

At4g13370 [Source:UniProtKB/TrEMBL;Acc:Q9T0K8]
SUBAcon: [mitochondrion,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.