Factsheet for TraesCS4D01G121400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G123300.1	Wheat	mitochondrion	94.88	97.58
TraesCS4A01G192100.1	Wheat	mitochondrion	95.57	97.46
HORVU4Hr1G024210.1	Barley	mitochondrion	92.52	93.95
HORVU4Hr1G024120.1	Barley	plastid	92.52	88.13
Os11t0120200-01	Rice	cytosol, mitochondrion, nucleus	76.45	77.97
Os12t0120000-01	Rice	cytosol, mitochondrion, nucleus	76.18	77.68
EES09151	Sorghum	cytosol, mitochondrion, plastid	72.99	72.79
Zm00001d052368_P001	Maize	cytosol, mitochondrion, plastid	70.22	69.36
GSMUA_Achr7P21900_001	Banana	mitochondrion	48.89	51.31
GSMUA_Achr4P10330_001	Banana	mitochondrion	49.72	49.25
KRH03797	Soybean	mitochondrion	43.77	44.89
Bra032701.1-P	Field mustard	mitochondrion	39.06	44.76
CDY01127	Canola	mitochondrion	38.78	44.44
CDY69222	Canola	mitochondrion, plastid	26.04	44.34
AT4G13370.1	Thale cress	endoplasmic reticulum, mitochondrion	41.27	44.28
PGSC0003DMT400001026	Potato	mitochondrion	41.55	43.6
CDY64935	Canola	mitochondrion	39.47	43.58
VIT_11s0016g04380.t01	Wine grape	plastid	42.66	43.38
Solyc12g007020.1.1	Tomato	mitochondrion	41.14	43.36
Bra034878.1-P	Field mustard	mitochondrion	38.78	42.88
CDY43695	Canola	mitochondrion	38.92	42.32
KRH56681	Soybean	vacuole	43.21	37.96
TraesCS5D01G309900.1	Wheat	cytosol, mitochondrion, plastid	27.15	26.2
TraesCS7D01G268500.2	Wheat	cytosol, mitochondrion, nucleus	25.35	24.97
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	16.48	21.72
TraesCS4D01G297000.1	Wheat	cytosol	17.73	21.69
TraesCS4D01G082000.1	Wheat	nucleus, plastid	13.99	21.58
TraesCS2D01G193600.1	Wheat	plastid	19.39	21.47

Protein Annotations

EnsemblPlants:TraesCS4D01G121400.1	EnsemblPlantsGene:TraesCS4D01G121400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008017	InterPro:DUF936_pln
ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF3	PFAM:PF06075	SEG:seg	MapMan:20.1.5.4.2

Description

No Description!

Coordinates

chr4D:-:102406255..102409564

Molecular Weight (calculated)

76192.0 Da

IEP (calculated)

10.417

GRAVY (calculated)

-0.291

Length

722 amino acids

Sequence
(BLAST)

001: MATVMPGVLL RLLQAMHTDE RVTGEHRSPA LQVTAVVPAL TASTADSLLC PSNGFLLQLS DGLHSTYVQP SPADADALLS ARPHIVGHLV HLDRLRFASP
101: VPRAVGLRPV PSSRSLPCVG NPEPLIVRSA ACSRGYVIRP DSSPDAAPPL MPSGSGSAPP SDAMDAAVKR TVLAPRNGPE AAALPGGSAV KRRFSSPAPA
201: KQRDPSPAVK GASRAASPSV KGASRASSPA VRGTSRSSSP APSKCVVPSL VAAEEENRRV AKEPAIIVPS RYRQPSPGGR RGAASPGGGG RRGSLSPGSR
301: RLSGEGGSKK KVGVLVSGIS KMTDLGSGSA MKPGRKSWDE SAMALAAAAA GTVKKSKVKV DRDTILRTQE AMSRRLSDAT TELSSNDDTS VDEKPKPRKK
401: TESSAGKAKT APKIILHDAK WTDGSVPLVT VSDKLSKIGK EADPPNAVFV LLLILQEAAE RRDAAAAAAA DALQEALITD SVIRNLSKFS ELCSLSKTAN
501: PLPTVDCFLA VYEDTLKWKK IAESMATNGA DEAAFWEKSA THWVEAALAT ELEVLKLVNS ATGSIYQKKS TEKPKAPAVE PPRTSLSKRP SLGASAKVQS
601: RASPLPAAWP KTPGMNETVE LANTLCREMH AWFLKFVNEA MDVGFHLFED QNIATRGKQS GHITVVLSQF KRISDWLDGV GKIADEDATK DNVERLKRKI
701: YQFVISRMGS AFESSVSVSA KS

Best Arabidopsis Sequence Match ( AT4G13370.1 )
(BLAST)

001: MASLAPGILL KLLQCMNSGT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVSLSERD TDLILSNRLQ LGQFIYLERL EFATPVPRAA
101: GIRPVAGRHA FVGKPEPLIA RVSNGSKRDF VIQPVSDSEY SLDPIAVYLN NRRIDDDGDS DVKPNVRQAL APVNQNEENR NQIRNQKPKT TPQRFSSPAS
201: SKRSVSSGKK NCSGAVAVTV ERDPSPVVSG KGRRSASPVP SKCVVPSLAA AREENRKVAR EPSIVVPSRY RQPSPNGRKM NPSPSGRRMS ISPGRRLSSG
301: LKMTPMVGDS SGKKKMAVIA AGISKVSEAL VGSSAKNGNR KNWEEPLAGD GSAKNKPDHQ AILRTQAAMT RRLSDANRRK SGSSSSVCEE KAKSCSSESS
401: LLEEVSAFEG LGITYHERKW TDGSVPLDSI SDELAKLGKE AMKRRDFAAK AAARALEEAN ANECIIRCLS KFSELSSASK VGNPLRIINE FLKIYEDVMK
501: YSKIASENSF SLSSDQQNPI SLWVEAALAT NLEVVSLVKS HESPSSLKKS MPTRLSPRPS SKTDNIVGMW TDLDGLKETA KFAVNLQSEM QVWFIEFVEE
601: SLDNKNAAKR SLDGSSIAAV LSQLKQVNEW LDRVSSNQEN KITTMDKIER LKRKIYGFVI HHVGSTYDNS ASS

Arabidopsis Description

At4g13370 [Source:UniProtKB/TrEMBL;Acc:Q9T0K8]
SUBAcon: [mitochondrion,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.