CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034878.1-P	Field mustard	mitochondrion	93.52	95.1
CDY69222	Canola	mitochondrion, plastid	59.34	92.92
CDY64935	Canola	mitochondrion	81.02	82.26
AT4G13370.1	Thale cress	endoplasmic reticulum, mitochondrion	83.13	82.02
CDY01127	Canola	mitochondrion	75.0	79.05
VIT_11s0016g04380.t01	Wine grape	plastid	58.89	55.07
KRH03797	Soybean	mitochondrion	56.63	53.41
PGSC0003DMT400001026	Potato	mitochondrion	54.22	52.33
Solyc12g007020.1.1	Tomato	mitochondrion	53.61	51.97
KRH56681	Soybean	vacuole	56.48	45.62
GSMUA_Achr7P21900_001	Banana	mitochondrion	44.43	42.88
GSMUA_Achr4P10330_001	Banana	mitochondrion	45.48	41.43
Os12t0120000-01	Rice	cytosol, mitochondrion, nucleus	43.67	40.96
Os11t0120200-01	Rice	cytosol, mitochondrion, nucleus	43.52	40.82
TraesCS4B01G123300.1	Wheat	mitochondrion	42.47	40.17
TraesCS4A01G192100.1	Wheat	mitochondrion	42.32	39.69
HORVU4Hr1G024210.1	Barley	mitochondrion	42.17	39.38
TraesCS4D01G121400.1	Wheat	mitochondrion	42.32	38.92
CDY05811	Canola	cytosol	7.53	38.76
CDX91320	Canola	extracellular	5.72	38.0
EES09151	Sorghum	cytosol, mitochondrion, plastid	40.96	37.57
HORVU4Hr1G024120.1	Barley	plastid	42.17	36.94
Zm00001d052368_P001	Maize	cytosol, mitochondrion, plastid	40.21	36.53
CDY52268	Canola	mitochondrion	22.44	29.39
CDY08643	Canola	mitochondrion, nucleus	5.42	29.27
CDX97548	Canola	mitochondrion	22.14	28.99
CDY69908	Canola	plastid	4.82	27.12
CDY06329	Canola	extracellular, nucleus, peroxisome	25.45	27.04
CDY22665	Canola	extracellular, nucleus, peroxisome	25.0	26.43
CDX95036	Canola	extracellular, nucleus, vacuole	28.01	25.31
CDX93540	Canola	extracellular, nucleus, vacuole	28.01	25.27
CDY60513	Canola	plastid	20.18	24.72
CDY42075	Canola	plastid	19.73	23.95
CDY61547	Canola	nucleus	18.37	23.92
CDX91723	Canola	nucleus	18.83	23.41
CDY47633	Canola	nucleus	18.07	23.17
CDY57317	Canola	nucleus	18.52	22.45
CDX82287	Canola	endoplasmic reticulum	20.63	21.78
CDY22966	Canola	endoplasmic reticulum	20.33	21.43

Protein Annotations

EnsemblPlants:CDY43695	EnsemblPlantsGene:GSBRNA2T00077150001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF3	PFAM:PF06075
ProteinID:CDY43695	ProteinID:CDY43695.1	SEG:seg	UniParc:UPI0004EDD3DA	UniProt:A0A078HYQ3	MapMan:20.1.5.4.2

Description

BnaC08g47020DBnaC08g47020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYQ3]

Coordinates

chrLK032565:-:107330..109815

Molecular Weight (calculated)

72507.9 Da

IEP (calculated)

9.939

GRAVY (calculated)

-0.423

Length

664 amino acids

Sequence
(BLAST)

001: MASLAPGILL KLLQCMNSNT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVCLSERD TDLIFTNRLQ LGQFIYLERL EFFTPVLRAA
101: GIRPVAGRHA FVGTPEPLIA RGSKRDFVIQ PVPASEYSLD PIAVYLNNKR SDDDDVTVAP KGRQALAPVN LNEENRGQKP NRTPQRFSSP ASAKQRSVSS
201: GKKHSSWVER DSSPVVSSNG RRSASPVPSK CVVPSLAAAR EENRKVAREA AIVVPSRYRQ PSPNGRKVNP SPSGRRLSIS PGRRLSSGLK MAPMVGDSLG
301: KKKMAALAAG ISKVSEALVG SSAKNGNRKN WDELDGNSSI KKNTDLQGIL RTQAAMTRRL SDANWRKSDS SACEEKAKSC SSASSLVEDE EDVSAFEGLG
401: ITYHDRKWTD GSVPLDSIPG DLARLAKEAV QRRNFAAKAA ARALEEANAN ECIIRCLSKF AEFSSASKLE NPLRIINQFL TIYGDVTKYS QLVSEDSFQS
501: SSDPPSPVSL WVEAALATNL DVVSLVKSQK NLESPSSVKK PTPTRLFAGP STKTDNIVGM WTDKDGMKET AKFAVNVQSE MQMWFIGFVE ESLDNKNARP
601: LNGSSIAAVL SQLKQVNDWL DRVVADQENQ ITTMHLTDKI ERLKRKIYGF VIHHVGSTFD NTAS

Best Arabidopsis Sequence Match ( AT4G13370.1 )
(BLAST)

001: MASLAPGILL KLLQCMNSGT RPTGDHRSAI LQVTGIVPAL AGSDLWPNQG FYVQISDSLN STYVSLSERD TDLILSNRLQ LGQFIYLERL EFATPVPRAA
101: GIRPVAGRHA FVGKPEPLIA RVSNGSKRDF VIQPVSDSEY SLDPIAVYLN NRRIDDDGDS DVKPNVRQAL APVNQNEENR NQIRNQKPKT TPQRFSSPAS
201: SKRSVSSGKK NCSGAVAVTV ERDPSPVVSG KGRRSASPVP SKCVVPSLAA AREENRKVAR EPSIVVPSRY RQPSPNGRKM NPSPSGRRMS ISPGRRLSSG
301: LKMTPMVGDS SGKKKMAVIA AGISKVSEAL VGSSAKNGNR KNWEEPLAGD GSAKNKPDHQ AILRTQAAMT RRLSDANRRK SGSSSSVCEE KAKSCSSESS
401: LLEEVSAFEG LGITYHERKW TDGSVPLDSI SDELAKLGKE AMKRRDFAAK AAARALEEAN ANECIIRCLS KFSELSSASK VGNPLRIINE FLKIYEDVMK
501: YSKIASENSF SLSSDQQNPI SLWVEAALAT NLEVVSLVKS HESPSSLKKS MPTRLSPRPS SKTDNIVGMW TDLDGLKETA KFAVNLQSEM QVWFIEFVEE
601: SLDNKNAAKR SLDGSSIAAV LSQLKQVNEW LDRVSSNQEN KITTMDKIER LKRKIYGFVI HHVGSTYDNS ASS

Arabidopsis Description

At4g13370 [Source:UniProtKB/TrEMBL;Acc:Q9T0K8]
SUBAcon: [mitochondrion,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.