CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, nucleus

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, peroxisome
Any Predictor:	extracellular, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06329	Canola	extracellular, nucleus, peroxisome	89.65	90.08
CDX91320	Canola	extracellular	12.42	78.0
CDY05811	Canola	cytosol	14.97	72.87
CDX93540	Canola	extracellular, nucleus, vacuole	84.87	72.42
CDX95036	Canola	extracellular, nucleus, vacuole	82.8	70.75
AT1G08760.1	Thale cress	cytosol, plastid, vacuole	82.48	69.25
CDY08643	Canola	mitochondrion, nucleus	11.62	59.35
CDY69908	Canola	plastid	10.99	58.47
Solyc06g073110.2.1	Tomato	endoplasmic reticulum, extracellular, nucleus	60.51	50.87
Os09t0516700-01	Rice	cytosol, extracellular, nucleus	34.55	46.87
GSMUA_Achr11P...	Banana	cytosol, extracellular, nucleus	30.89	46.3
EER99187	Sorghum	cytosol, mitochondrion, nucleus	50.16	42.4
GSMUA_Achr5P25710_001	Banana	cytosol, plasma membrane, plastid	49.68	42.33
GSMUA_Achr3P21570_001	Banana	extracellular, peroxisome, plastid	48.89	41.37
HORVU5Hr1G079460.1	Barley	cytosol, mitochondrion, plastid	49.2	41.09
TraesCS7D01G268500.2	Wheat	cytosol, mitochondrion, nucleus	47.77	40.93
Zm00001d021181_P005	Maize	cytosol, mitochondrion, nucleus	48.41	40.86
TraesCS7B01G166200.1	Wheat	cytosol, mitochondrion, plastid	47.61	40.79
EES14150	Sorghum	cytosol, plasma membrane, plastid	48.09	40.65
TraesCS5D01G309900.1	Wheat	cytosol, mitochondrion, plastid	48.41	40.64
TraesCS5B01G303400.1	Wheat	cytosol, mitochondrion, plastid	48.57	40.61
Os08t0541500-01	Rice	mitochondrion, peroxisome, plastid	47.29	40.52
TraesCS5A01G303100.1	Wheat	cytosol, mitochondrion, plastid	48.41	40.48
TraesCS7A01G266300.1	Wheat	cytosol, mitochondrion, plastid	47.29	40.41
Zm00001d031700_P003	Maize	cytosol, mitochondrion, plastid	47.77	40.21
Zm00001d006130_P001	Maize	mitochondrion, plastid	48.09	39.68
GSMUA_Achr11P...	Banana	plastid	44.59	39.66
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	17.83	36.6
CDX97548	Canola	mitochondrion	25.8	31.95
CDY52268	Canola	mitochondrion	25.64	31.76
CDY61547	Canola	nucleus	23.57	29.02
CDY47633	Canola	nucleus	23.73	28.76
CDX91723	Canola	nucleus	23.73	27.9
CDY57317	Canola	nucleus	23.41	26.82
CDY60513	Canola	plastid	23.09	26.75
GSMUA_Achr9P08220_001	Banana	mitochondrion	44.75	26.16
CDY42075	Canola	plastid	22.77	26.14
CDY69222	Canola	mitochondrion, plastid	17.36	25.71
CDY01127	Canola	mitochondrion	25.64	25.56
CDY64935	Canola	mitochondrion	26.43	25.38
HORVU4Hr1G014370.1	Barley	nucleus, plastid	18.79	25.32
KXG28276	Sorghum	plastid	19.75	25.15
TraesCS4A01G231900.1	Wheat	nucleus, plastid	17.83	25.06
TraesCS4D01G082000.1	Wheat	nucleus, plastid	18.63	25.0
CDY43695	Canola	mitochondrion	26.43	25.0
TraesCS4B01G084100.1	Wheat	nucleus, plastid	18.47	24.95
CDX82287	Canola	endoplasmic reticulum	23.09	23.05
CDY22966	Canola	endoplasmic reticulum	23.09	23.02

Protein Annotations

EnsemblPlants:CDY22665	EnsemblPlantsGene:GSBRNA2T00019335001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF4	PFAM:PF06075
ProteinID:CDY22665	ProteinID:CDY22665.1	SEG:seg	UniParc:UPI0004EE9668	UniProt:A0A078G870	MapMan:20.1.5.4.2

Description

BnaC08g42990DBnaC08g42990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G870]

Coordinates

chrLK032134:-:368595..371236

Molecular Weight (calculated)

68028.1 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.460

Length

628 amino acids

Sequence
(BLAST)

001: MANLVPGVLL KLLQHMNTDV KIAGEHRSSL LQVISIVPAL AGGELFSNQG FYLKVSDSSH ATYVSLPDEQ DYLILSDKLQ LGQFIHVDRV ESSSPVPILC
101: GVRVVPGRHP CLGTPEDIVA TQFPSGNGLK PKERVKATAK GGVVAPKKTE SCESKKPSAL SRAKSGLSLD VRKEPLRKLK TSKSIPSSPT SCYSLPTSFA
201: KFANGIKQQQ TVKPEKGRFL LKVESPKKLP LIKNFVQGIE FGAKALRKSW EGRVDIRASD SSGLKKLTKR DTTPDARSLT APRKSTSSEK LPSKQERANV
301: FAKSSKEQSK TQSTKKVEST GVVETKDKTS KPKSTSTTVD KRSTAENGLP GSLVKVPVNS KRLAYASTQW SSLPSSLSRL GQEVLRHRDA AQVVAIEAMQ
401: EASASESLLQ CLIMYNELMS TAKEDDPLPV VEQFLKLHSS LKNVQIVTES LSRLVSSKSS PEHEENRSEE AVKAALEKQK LAASWATTVA AGSESPPPKW
501: VKGNGLNEAN ELAEKLQTVS QDWFLGFVER FLDADVVETS SNLSDNGQIA GMLSQLKSVN DWLDEIGSKE DGEGLQEVAK ETIDGLRKKI YEYLLTHVES
601: AAAALGGGSG GGSVSSPRHK TMETKAKR

Best Arabidopsis Sequence Match ( AT1G08760.1 )
(BLAST)

001: MANLVPGVLL KLLQHMNTDV KIAGEHRSSL LQVISIVPAL AGGELFPNQG FYLKVSDSSH ATYVSLPDEH DDLILSDKIQ LGQYIHVDRV ESSSPVPILR
101: GVRPVPGRHP CVGDPEDIVA THSLGFLSDD KVKNDNNGGV SSKPKERVKA SVKANGSGSD GERIIGNRLS VSISRDDSSD GKKPVSALFR AKSAKSSLSL
201: DVKKESLGKL KTSSGSKSIP SSPTSCYSLP NSFAKFANGI KQQQTVKPKL LEKGSPRMGL SEKGRSLLKA ESPKVGKKLP MIKNFVQGIE FGAKALRKSW
301: EGNLDIRGSD RTKSSLPRRD LTPDSRSLAA PRRSTSSEKL PSKQERANVF ARSSKEHNKI QSTKKVEPTA VLDTKDKTSR PKSTSVEKKS VAENGLPGNL
401: VKVSVNGKRL AAANIQWSSL PPSLSRMGQE VLRHREAAQV VAIEALQEAS ASESLLQCLI MYSDLLSTAK EDDPLPVVEQ FLKLHSGLKN VQVITESLSK
501: LLSLMSSPDN EENRSEEAIK AASEKQKLAA SWVQAALVTN LSPFSVYSSK QAKLAASRSK PVIILESPGN NSSSKTRGNI QNKPTIGSKL VAQGMIRKHR
601: ENSSSQKATS VAGSESPPLN WVKGNGLNEA TDLAEKLQMV SQDWFLGFVE RFLDADVITS SSLSLSDNGQ IAGMLSQLKS VNDWLDEIGS KEDEEGLQEV
701: SKETIDRLRK KIYEYLLTHV ESAAAALGGG GGSVSSPRPK PIETKAKR

Arabidopsis Description

At1g08760 [Source:UniProtKB/TrEMBL;Acc:Q9FRR2]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.