Factsheet for GSMUA_Achr5P25710_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	31.21	75.16
GSMUA_Achr3P21570_001	Banana	extracellular, peroxisome, plastid	74.36	73.85
GSMUA_Achr11P...	Banana	cytosol, extracellular, nucleus	39.76	69.93
GSMUA_Achr11P...	Banana	plastid	64.86	67.71
CDY05811	Canola	cytosol	11.67	66.67
Os09t0516700-01	Rice	cytosol, extracellular, nucleus	37.72	60.04
CDX91320	Canola	extracellular	8.14	60.0
EES14150	Sorghum	cytosol, plasma membrane, plastid	58.75	58.28
Os08t0541500-01	Rice	mitochondrion, peroxisome, plastid	57.26	57.57
TraesCS7D01G268500.2	Wheat	cytosol, mitochondrion, nucleus	56.72	57.03
Zm00001d031700_P003	Maize	cytosol, mitochondrion, plastid	57.67	56.97
TraesCS7B01G166200.1	Wheat	cytosol, mitochondrion, plastid	56.45	56.75
TraesCS7A01G266300.1	Wheat	cytosol, mitochondrion, plastid	56.58	56.73
EER99187	Sorghum	cytosol, mitochondrion, nucleus	56.85	56.39
Zm00001d021181_P005	Maize	cytosol, mitochondrion, nucleus	56.17	55.65
TraesCS5D01G309900.1	Wheat	cytosol, mitochondrion, plastid	55.5	54.68
TraesCS5B01G303400.1	Wheat	cytosol, mitochondrion, plastid	55.5	54.46
TraesCS5A01G303100.1	Wheat	cytosol, mitochondrion, plastid	55.36	54.33
HORVU5Hr1G079460.1	Barley	cytosol, mitochondrion, plastid	55.36	54.26
Zm00001d006130_P001	Maize	mitochondrion, plastid	55.09	53.35
VIT_05s0102g01200.t01	Wine grape	endoplasmic reticulum, extracellular, nucleus	51.7	51.56
CDY08643	Canola	mitochondrion, nucleus	8.41	50.41
KRH24591	Soybean	nucleus	50.34	50.0
Solyc06g073110.2.1	Tomato	endoplasmic reticulum, extracellular, nucleus	50.61	49.93
CDY22665	Canola	extracellular, nucleus, peroxisome	42.33	49.68
KRH29601	Soybean	nucleus	49.93	49.6
CDY06329	Canola	extracellular, nucleus, peroxisome	40.71	48.0
Bra031640.1-P	Field mustard	cytosol, nucleus, peroxisome	43.28	46.1
KRH23226	Soybean	nucleus	47.08	46.02
KRH10106	Soybean	nucleus	47.76	45.71
CDX95036	Canola	extracellular, nucleus, vacuole	45.05	45.17
Bra018603.1-P	Field mustard	cytosol, nucleus, vacuole	44.91	44.97
CDX93540	Canola	extracellular, nucleus, vacuole	44.78	44.84
AT1G08760.1	Thale cress	cytosol, plastid, vacuole	45.45	44.79
CDY69908	Canola	plastid	7.06	44.07
GSMUA_Achr9P08220_001	Banana	mitochondrion	50.75	34.82
GSMUA_Achr1P21840_001	Banana	extracellular	25.1	34.58
GSMUA_Achr4P10950_001	Banana	cytosol, mitochondrion, nucleus	24.69	31.11
GSMUA_Achr4P03420_001	Banana	cytosol	24.56	30.57
GSMUA_Achr7P21900_001	Banana	mitochondrion	28.09	30.09
GSMUA_Achr8P14440_001	Banana	mitochondrion	20.76	29.77
GSMUA_Achr4P10330_001	Banana	mitochondrion	29.17	29.49
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	20.22	26.42

Protein Annotations

EnsemblPlants:GSMUA_Achr5P25710_001	EnsemblPlants:GSMUA_Achr5T25710_001	EnsemblPlantsGene:GSMUA_Achr5G25710_001	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928
PANTHER:PTHR31928:SF11	PFAM:PF06075	SEG:seg	UniParc:UPI00029616CB	UniProt:M0T1P6	MapMan:20.1.5.4.2

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G25710_001]

Coordinates

chr5:-:26653839..26659315

Molecular Weight (calculated)

78352.9 Da

IEP (calculated)

10.222

GRAVY (calculated)

-0.441

Length

737 amino acids

Sequence
(BLAST)

001: MASLVPGVLI KLLQHMNTDV KVAGEHRSSL LQVASIVPAL AGSDLFTNKG FYLKVSDSSH ATYVYLSDEH NDLILSDKIQ LGQFIHVDRL EAGSPVPILK
101: GVRPLPGRHQ CVGNPEDLVA TSSLNFLNAE KPKPSNDSKY NSSTSSESEK SKLGISKSNI KAPEVEKKKS SLTKSSSVLS NQLVKGKSEK KFAVTARSKS
201: MISRTIPSSP TSVYSLPGSF EKFSNEVKKH ARAKGLEKPA TSRMGLEKAA SVLKVTTAGR KSSTGNFLGN LVPSIELGPK ALRKSWEGHM ESKGRDSSTL
301: KAAKLERRSE SRSTSAPRQK SSTNEKLLPK DDSKIQTPVK KGIVSAAAED SDKTVKHRPP VLRKSSETTN GLNLVNLVKV VPSNRKWTDG SVSWQTLPSS
401: LAKLGKELLK YRDAAQLAAI EAIQEAGAAE SLIRCLSMYA ELSATAKEDN PQPAVEQFLA FHSSLSRAAM VTDSLSKTMS QTPAVASPDA PPGVDAIPED
501: ALKVSTGNRR RAASWVSAAL ATDLSHFSLY NHKSSTASSA SPAVVVLEGP SKTAAAAASP AKASPQSKPR PSPALASATK GKARGTAPPS PPPLEWDRGA
601: GLEEGAELAR ALREDARAWF LEFVERFLDA DAAAPVPSDR EQVAAMLSQL KKVNDWLEAI GSQRREGETE PEAEAGETEG GEGPSSGVPV ETIQRLRKKI
701: YEYLLTHVES AAVALGGGVH AAAPHPPAAP GGRPGRK

Best Arabidopsis Sequence Match ( AT1G08760.1 )
(BLAST)

001: MANLVPGVLL KLLQHMNTDV KIAGEHRSSL LQVISIVPAL AGGELFPNQG FYLKVSDSSH ATYVSLPDEH DDLILSDKIQ LGQYIHVDRV ESSSPVPILR
101: GVRPVPGRHP CVGDPEDIVA THSLGFLSDD KVKNDNNGGV SSKPKERVKA SVKANGSGSD GERIIGNRLS VSISRDDSSD GKKPVSALFR AKSAKSSLSL
201: DVKKESLGKL KTSSGSKSIP SSPTSCYSLP NSFAKFANGI KQQQTVKPKL LEKGSPRMGL SEKGRSLLKA ESPKVGKKLP MIKNFVQGIE FGAKALRKSW
301: EGNLDIRGSD RTKSSLPRRD LTPDSRSLAA PRRSTSSEKL PSKQERANVF ARSSKEHNKI QSTKKVEPTA VLDTKDKTSR PKSTSVEKKS VAENGLPGNL
401: VKVSVNGKRL AAANIQWSSL PPSLSRMGQE VLRHREAAQV VAIEALQEAS ASESLLQCLI MYSDLLSTAK EDDPLPVVEQ FLKLHSGLKN VQVITESLSK
501: LLSLMSSPDN EENRSEEAIK AASEKQKLAA SWVQAALVTN LSPFSVYSSK QAKLAASRSK PVIILESPGN NSSSKTRGNI QNKPTIGSKL VAQGMIRKHR
601: ENSSSQKATS VAGSESPPLN WVKGNGLNEA TDLAEKLQMV SQDWFLGFVE RFLDADVITS SSLSLSDNGQ IAGMLSQLKS VNDWLDEIGS KEDEEGLQEV
701: SKETIDRLRK KIYEYLLTHV ESAAAALGGG GGSVSSPRPK PIETKAKR

Arabidopsis Description

At1g08760 [Source:UniProtKB/TrEMBL;Acc:Q9FRR2]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.