Factsheet for GSMUA_Achr4P10950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P03420_001	Banana	cytosol	68.21	67.4
HORVU2Hr1G035200.1	Barley	plastid	27.01	40.72
TraesCS2D01G193600.1	Wheat	plastid	39.15	35.12
TraesCS2A01G194300.1	Wheat	plastid	38.63	34.56
Zm00001d006732_P001	Maize	plastid	38.29	34.51
TraesCS2B01G212600.1	Wheat	plastid	38.8	34.5
KXG36592	Sorghum	plastid	37.78	33.48
Os07t0588300-00	Rice	plastid	36.07	32.56
Bra001755.1-P	Field mustard	nucleus	27.52	26.92
AT3G19610.1	Thale cress	vacuole	28.72	26.25
CDX82287	Canola	endoplasmic reticulum	27.52	25.6
CDY22966	Canola	endoplasmic reticulum	27.52	25.56
Solyc10g049800.1.1	Tomato	cytosol	17.78	25.43
PGSC0003DMT400066158	Potato	nucleus	28.21	25.27
GSMUA_Achr5P25710_001	Banana	cytosol, plasma membrane, plastid	31.11	24.69
PGSC0003DMT400008388	Potato	cytosol	27.52	24.58
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	12.82	24.51
Solyc01g107120.2.1	Tomato	cytosol	27.18	24.5
GSMUA_Achr3P21570_001	Banana	extracellular, peroxisome, plastid	30.77	24.26
GSMUA_Achr8P14440_001	Banana	mitochondrion	21.2	24.12
GSMUA_Achr11P...	Banana	cytosol, extracellular, nucleus	17.27	24.11
GSMUA_Achr1P21840_001	Banana	extracellular	21.88	23.93
GSMUA_Achr11P...	Banana	plastid	27.86	23.09
GSMUA_Achr7P21900_001	Banana	mitochondrion	24.96	21.22
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	20.34	21.1
GSMUA_Achr4P10330_001	Banana	mitochondrion	26.15	20.99
GSMUA_Achr9P08220_001	Banana	mitochondrion	31.11	16.95

Protein Annotations

EnsemblPlants:GSMUA_Achr4P10950_001	EnsemblPlants:GSMUA_Achr4T10950_001	EnsemblPlantsGene:GSMUA_Achr4G10950_001	InterPro:DUF936_pln	PANTHER:PTHR31928	PFAM:PF06075
SEG:seg	UniParc:UPI000296D9C8	UniProt:M0SMW2	MapMan:20.1.5.4.2	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G10950_001]

Coordinates

chr4:+:7910029..7912116

Molecular Weight (calculated)

64406.8 Da

IEP (calculated)

8.723

GRAVY (calculated)

-0.518

Length

585 amino acids

Sequence
(BLAST)

001: MASLSPGVLL RLLQDDKSSS NPPRRPLHAT PAVLQITGIV PAVAGPDLCP DKGFYIKVSD SSHSIYVSLP ADLNDLILAD RLQLGQLIQV RRLEPASPVP
101: VLRDFRLLAG RHPCLHDTRQ LHSRSHSSVG DRISEVGMSS PSFAPSPTNR AAKRRERRSS DALHELQKFT VPCMDEDTYD SDDSRFSCTS SPASSRFSYA
201: SSSFSSPSPC TTKARKSWHA SGRITERRRE AKPTVQSRSA SVSPSRLAHH ARLMPKDDAP AAFQRNTEKA LKVLGNSGKW KLPGSDKAST EISSTTTTSF
301: CSSDGGVLWA SLPPNLMRHG KEVVRQRDSS LQAAIDALLE ASAADKLIDT YSELQSDKDG DPQLMVNRFL NFHHTLGQTR LIAQSLERST QPSSCNYNPA
401: SARSVGKVAA ERKSCATSWV KAALESDLVR FPTQVKALPE TSEAPPSHGG RTKNSLAKGS SLLLASNTLQ HEYNRWFLRY IDKFLDSIQS KTGYDGCELE
501: VAGLLCQLKR VDGWLNSITS KEISSWPRDR LRDGVLSEED EAEACERVRR KIYNVLLRHV ESAAIALESM STPDEEQDRE LMLSS

Best Arabidopsis Sequence Match ( AT1G08760.1 )
(BLAST)

001: MANLVPGVLL KLLQHMNTDV KIAGEHRSSL LQVISIVPAL AGGELFPNQG FYLKVSDSSH ATYVSLPDEH DDLILSDKIQ LGQYIHVDRV ESSSPVPILR
101: GVRPVPGRHP CVGDPEDIVA THSLGFLSDD KVKNDNNGGV SSKPKERVKA SVKANGSGSD GERIIGNRLS VSISRDDSSD GKKPVSALFR AKSAKSSLSL
201: DVKKESLGKL KTSSGSKSIP SSPTSCYSLP NSFAKFANGI KQQQTVKPKL LEKGSPRMGL SEKGRSLLKA ESPKVGKKLP MIKNFVQGIE FGAKALRKSW
301: EGNLDIRGSD RTKSSLPRRD LTPDSRSLAA PRRSTSSEKL PSKQERANVF ARSSKEHNKI QSTKKVEPTA VLDTKDKTSR PKSTSVEKKS VAENGLPGNL
401: VKVSVNGKRL AAANIQWSSL PPSLSRMGQE VLRHREAAQV VAIEALQEAS ASESLLQCLI MYSDLLSTAK EDDPLPVVEQ FLKLHSGLKN VQVITESLSK
501: LLSLMSSPDN EENRSEEAIK AASEKQKLAA SWVQAALVTN LSPFSVYSSK QAKLAASRSK PVIILESPGN NSSSKTRGNI QNKPTIGSKL VAQGMIRKHR
601: ENSSSQKATS VAGSESPPLN WVKGNGLNEA TDLAEKLQMV SQDWFLGFVE RFLDADVITS SSLSLSDNGQ IAGMLSQLKS VNDWLDEIGS KEDEEGLQEV
701: SKETIDRLRK KIYEYLLTHV ESAAAALGGG GGSVSSPRPK PIETKAKR

Arabidopsis Description

At1g08760 [Source:UniProtKB/TrEMBL;Acc:Q9FRR2]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.