Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001755.1-P | Field mustard | nucleus | 76.72 | 82.11 |
| CDX82287 | Canola | endoplasmic reticulum | 78.59 | 79.97 |
| CDY22966 | Canola | endoplasmic reticulum | 78.59 | 79.84 |
| Solyc10g049800.1.1 | Tomato | cytosol | 21.72 | 33.99 |
| PGSC0003DMT400008388 | Potato | cytosol | 32.97 | 32.21 |
| PGSC0003DMT400066158 | Potato | nucleus | 32.81 | 32.16 |
| Solyc01g107120.2.1 | Tomato | cytosol | 31.72 | 31.28 |
| GSMUA_Achr4P10950_001 | Banana | cytosol, mitochondrion, nucleus | 26.25 | 28.72 |
| GSMUA_Achr4P03420_001 | Banana | cytosol | 24.69 | 26.69 |
| AT3G14170.2 | Thale cress | cytosol, golgi, mitochondrion, nucleus | 19.69 | 24.9 |
| Os07t0588300-00 | Rice | plastid | 25.0 | 24.69 |
| HORVU2Hr1G035200.1 | Barley | plastid | 14.84 | 24.48 |
| TraesCS2B01G212600.1 | Wheat | plastid | 24.53 | 23.86 |
| TraesCS2D01G193600.1 | Wheat | plastid | 24.22 | 23.77 |
| Zm00001d006732_P001 | Maize | plastid | 23.91 | 23.57 |
| TraesCS2A01G194300.1 | Wheat | plastid | 23.91 | 23.39 |
| KXG36592 | Sorghum | plastid | 23.12 | 22.42 |
| AT1G23790.1 | Thale cress | nucleus | 18.12 | 22.39 |
| AT1G08760.1 | Thale cress | cytosol, plastid, vacuole | 25.94 | 22.19 |
| AT2G31920.1 | Thale cress | plastid | 19.84 | 21.71 |
| AT4G13370.1 | Thale cress | endoplasmic reticulum, mitochondrion | 22.66 | 21.55 |
| AT1G70340.1 | Thale cress | mitochondrion | 15.47 | 19.41 |
Protein Annotations
| MapMan:20.1.5.4.2 | EntrezGene:821498 | ProteinID:AEE76266.1 | ArrayExpress:AT3G19610 | EnsemblPlantsGene:AT3G19610 | RefSeq:AT3G19610 |
| TAIR:AT3G19610 | RefSeq:AT3G19610-TAIR-G | EnsemblPlants:AT3G19610.1 | TAIR:AT3G19610.1 | ncoils:Coil | InterPro:DUF936_pln |
| UniProt:F4JCB3 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008017 | GO:GO:0008150 |
| RefSeq:NP_188595.2 | PFAM:PF06075 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007098 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR31928 | PANTHER:PTHR31928:SF12 | SignalP:SignalP-noTM | UniParc:UPI0001739289 | SEG:seg |
Description
Plant protein of unknown function (DUF936) [Source:TAIR;Acc:AT3G19610]
Coordinates
chr3:-:6812181..6814783
Molecular Weight (calculated)
73321.3 Da
IEP (calculated)
9.550
GRAVY (calculated)
-0.680
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQIEKRSLL CSFLSVFHLI HLQALLLEMA ELRSGVLFKL LEEMGVGKVR RDVDHRPVLL QIRCIIPVLA AGGLWPNKGF FLRITDSTHS IYVSLPREEN
101: DLVLYDKLQI GQLIFVEKLE FAYPVPMIKG IRPTPGRRAC TGDPIDLIPK ERIEKFCVGL SDIEENYDHQ VKKPRRTRWN NSSVSELNFT DLGLSKNLSS
201: VMEEKDDTES MISSCSSSFS SAARRRSWIG SADNRKRRDS LDPSMIKNHD HDTKHVSRAR SSSATSPSLS IRSYGGIEEK SSSRTRRRDV VVSPSPRWSK
301: SLSYGSRSNK SKNLLPPKSN TFESSDPISR KRSWTETEIL WDSLPPKVVN LGKEILRQRD TAIRAASQAL LEASAAERLL KCLRSYSELS DRRNQHQENQ
401: QPPIQDFLSF QDELSKSRLI IQSLSTEKTE HCNANIVKTG DERREKATQW IKSALATDLK LVSLSASKPT QSPGRKGLTL IAQESDNREG NASESNSRLG
501: EIKERLSRAS SELRNWLKEE GRSWYLNRVE KYLDEISNGT KWREMRSEEV GETMYQIKRV SDWLDTIVKG EEDEEEKMVM MMMSESETEA CGRVRNKIYR
601: ILLKHVETTS LLSHQRSTSL MSHHQQQQHE QHLFQKTMSL
101: DLVLYDKLQI GQLIFVEKLE FAYPVPMIKG IRPTPGRRAC TGDPIDLIPK ERIEKFCVGL SDIEENYDHQ VKKPRRTRWN NSSVSELNFT DLGLSKNLSS
201: VMEEKDDTES MISSCSSSFS SAARRRSWIG SADNRKRRDS LDPSMIKNHD HDTKHVSRAR SSSATSPSLS IRSYGGIEEK SSSRTRRRDV VVSPSPRWSK
301: SLSYGSRSNK SKNLLPPKSN TFESSDPISR KRSWTETEIL WDSLPPKVVN LGKEILRQRD TAIRAASQAL LEASAAERLL KCLRSYSELS DRRNQHQENQ
401: QPPIQDFLSF QDELSKSRLI IQSLSTEKTE HCNANIVKTG DERREKATQW IKSALATDLK LVSLSASKPT QSPGRKGLTL IAQESDNREG NASESNSRLG
501: EIKERLSRAS SELRNWLKEE GRSWYLNRVE KYLDEISNGT KWREMRSEEV GETMYQIKRV SDWLDTIVKG EEDEEEKMVM MMMSESETEA CGRVRNKIYR
601: ILLKHVETTS LLSHQRSTSL MSHHQQQQHE QHLFQKTMSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.