CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
mitochondrion 1
nucleus 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001755.1-P	Field mustard	nucleus	91.59	96.49
CDX82287	Canola	endoplasmic reticulum	96.03	96.18
AT3G19610.1	Thale cress	vacuole	79.84	78.59
CDX91320	Canola	extracellular	5.71	36.0
CDY05811	Canola	cytosol	7.3	35.66
Solyc10g049800.1.1	Tomato	cytosol	22.22	34.23
PGSC0003DMT400066158	Potato	nucleus	33.49	32.31
PGSC0003DMT400008388	Potato	cytosol	33.49	32.21
Solyc01g107120.2.1	Tomato	cytosol	31.9	30.97
CDY69908	Canola	plastid	5.4	28.81
CDY08643	Canola	mitochondrion, nucleus	5.56	28.46
GSMUA_Achr4P10950_001	Banana	cytosol, mitochondrion, nucleus	25.56	27.52
GSMUA_Achr4P03420_001	Banana	cytosol	24.76	26.35
Os07t0588300-00	Rice	plastid	25.08	24.38
HORVU2Hr1G035200.1	Barley	plastid	14.92	24.23
TraesCS2D01G193600.1	Wheat	plastid	24.76	23.93
TraesCS2B01G212600.1	Wheat	plastid	24.92	23.86
TraesCS2A01G194300.1	Wheat	plastid	24.44	23.55
Zm00001d006732_P001	Maize	plastid	23.81	23.11
CDY22665	Canola	extracellular, nucleus, peroxisome	23.02	23.09
CDY06329	Canola	extracellular, nucleus, peroxisome	22.22	22.4
CDY52268	Canola	mitochondrion	17.94	22.29
KXG36592	Sorghum	plastid	23.33	22.27
CDY42075	Canola	plastid	19.21	22.12
CDX97548	Canola	mitochondrion	17.62	21.89
CDY60513	Canola	plastid	18.57	21.59
CDY64935	Canola	mitochondrion	22.06	21.25
CDX95036	Canola	extracellular, nucleus, vacuole	24.76	21.22
CDY61547	Canola	nucleus	16.98	20.98
CDY01127	Canola	mitochondrion	20.95	20.95
CDX93540	Canola	extracellular, nucleus, vacuole	24.29	20.79
CDY47633	Canola	nucleus	16.83	20.46
CDY43695	Canola	mitochondrion	21.43	20.33
CDX91723	Canola	nucleus	16.98	20.04
CDY69222	Canola	mitochondrion, plastid	13.33	19.81
CDY57317	Canola	nucleus	16.98	19.53

Protein Annotations

EnsemblPlants:CDY22966	EnsemblPlantsGene:GSBRNA2T00021370001	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928	PANTHER:PTHR31928:SF12
PFAM:PF06075	ProteinID:CDY22966	ProteinID:CDY22966.1	SEG:seg	UniParc:UPI0004EEAF8A	UniProt:A0A078GC68
MapMan:20.1.5.4.2	:	:	:	:	:

Description

BnaC03g41030DBnaC03g41030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC68]

Coordinates

chrLK032138:+:232514..234675

Molecular Weight (calculated)

72233.2 Da

IEP (calculated)

9.975

GRAVY (calculated)

-0.689

Length

630 amino acids

Sequence
(BLAST)

001: MQQIEKHTLL SPFYLSLFLL TQISQQPFFL PMAELRSGVL FKLLEEMGVG KARRNVDQRP VLLQIRSIIP VLAAGGLWPN KGFFLRISDS SHSMYASLPR
101: EENDLVLYDK LQIGQLIFVE KLEFAYPVPM IKGIRPTPGR RACTGEPIDL IPKERIEKFC ASLSDTEESY DEQVKRPRRT RWSSSSVSEM NVTDFGLLKN
201: LSSVMEERDD TESMVSNCSS SLSSAARRRS WMGLGDARKR RDSLDPSMVK SHVHDIRLHV SRTRSYPAAS PSPSVRSCGV IEEKSSGRTR RRDSVVSPSP
301: KWAKSLSYGS GSNKSKNLLL PPRSNTLESS DSISRKRSWT ETEILWNSLP PKVANLGKEI LRQRDKAIRA ASQALLEASA AERLLKCLRS YSELSDKRIQ
401: HHQSQQPPIG EFLSFQDELS KSRLIIQSLS TEETKHCSSR TGEERREKAT QWIKSALATD LKPVSLPASK PTQSPARKSF TLIAQETNNR EDNTRERDMA
501: SGERKERLSR AARELRNLVK EEGRRWYLSR VEKYLDEISN VTKWREMSSQ QVGETMYQIK RVSDWLDAMV KGEEEEQEEE EVVMMMTESE REACGRVRNK
601: IYRILLRHVE KTSLLSHQRN TNLMSHQQYY

Best Arabidopsis Sequence Match ( AT3G19610.1 )
(BLAST)

001: MQQIEKRSLL CSFLSVFHLI HLQALLLEMA ELRSGVLFKL LEEMGVGKVR RDVDHRPVLL QIRCIIPVLA AGGLWPNKGF FLRITDSTHS IYVSLPREEN
101: DLVLYDKLQI GQLIFVEKLE FAYPVPMIKG IRPTPGRRAC TGDPIDLIPK ERIEKFCVGL SDIEENYDHQ VKKPRRTRWN NSSVSELNFT DLGLSKNLSS
201: VMEEKDDTES MISSCSSSFS SAARRRSWIG SADNRKRRDS LDPSMIKNHD HDTKHVSRAR SSSATSPSLS IRSYGGIEEK SSSRTRRRDV VVSPSPRWSK
301: SLSYGSRSNK SKNLLPPKSN TFESSDPISR KRSWTETEIL WDSLPPKVVN LGKEILRQRD TAIRAASQAL LEASAAERLL KCLRSYSELS DRRNQHQENQ
401: QPPIQDFLSF QDELSKSRLI IQSLSTEKTE HCNANIVKTG DERREKATQW IKSALATDLK LVSLSASKPT QSPGRKGLTL IAQESDNREG NASESNSRLG
501: EIKERLSRAS SELRNWLKEE GRSWYLNRVE KYLDEISNGT KWREMRSEEV GETMYQIKRV SDWLDTIVKG EEDEEEKMVM MMMSESETEA CGRVRNKIYR
601: ILLKHVETTS LLSHQRSTSL MSHHQQQQHE QHLFQKTMSL

Arabidopsis Description

Plant protein of unknown function (DUF936) [Source:TAIR;Acc:AT3G19610]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.