CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91320	Canola	extracellular	43.09	53.0
CDY05811	Canola	cytosol	49.59	47.29
CDY69908	Canola	plastid	32.52	33.9
GSMUA_Achr11P...	Banana	cytosol, extracellular, nucleus	53.66	15.75
Os09t0516700-01	Rice	cytosol, extracellular, nucleus	52.03	13.82
CDY06329	Canola	extracellular, nucleus, peroxisome	60.16	11.84
CDY22665	Canola	extracellular, nucleus, peroxisome	59.35	11.62
CDX95036	Canola	extracellular, nucleus, vacuole	61.79	10.34
CDX93540	Canola	extracellular, nucleus, vacuole	60.98	10.19
VIT_05s0102g01200.t01	Wine grape	endoplasmic reticulum, extracellular, nucleus	59.35	9.88
Solyc06g073110.2.1	Tomato	endoplasmic reticulum, extracellular, nucleus	59.35	9.77
KRH29601	Soybean	nucleus	57.72	9.57
KRH24591	Soybean	nucleus	57.72	9.57
KRH23226	Soybean	nucleus	56.91	9.28
KRH10106	Soybean	nucleus	56.91	9.09
GSMUA_Achr3P21570_001	Banana	extracellular, peroxisome, plastid	53.66	8.89
CDY52268	Canola	mitochondrion	36.59	8.88
CDX97548	Canola	mitochondrion	36.59	8.88
EER99187	Sorghum	cytosol, mitochondrion, nucleus	52.85	8.75
Zm00001d021181_P005	Maize	cytosol, mitochondrion, nucleus	52.03	8.6
Os08t0541500-01	Rice	mitochondrion, peroxisome, plastid	51.22	8.59
CDY69222	Canola	mitochondrion, plastid	29.27	8.49
Zm00001d031700_P003	Maize	cytosol, mitochondrion, plastid	51.22	8.45
GSMUA_Achr5P25710_001	Banana	cytosol, plasma membrane, plastid	50.41	8.41
GSMUA_Achr11P...	Banana	plastid	47.97	8.36
EES14150	Sorghum	cytosol, plasma membrane, plastid	50.41	8.34
TraesCS7D01G268500.2	Wheat	cytosol, mitochondrion, nucleus	49.59	8.32
TraesCS7B01G166200.1	Wheat	cytosol, mitochondrion, plastid	49.59	8.32
TraesCS7A01G266300.1	Wheat	cytosol, mitochondrion, plastid	49.59	8.3
CDY61547	Canola	nucleus	34.15	8.24
TraesCS5D01G309900.1	Wheat	cytosol, mitochondrion, plastid	49.59	8.16
Zm00001d006130_P001	Maize	mitochondrion, plastid	50.41	8.15
TraesCS5B01G303400.1	Wheat	cytosol, mitochondrion, plastid	49.59	8.12
TraesCS5A01G303100.1	Wheat	cytosol, mitochondrion, plastid	49.59	8.12
HORVU5Hr1G079460.1	Barley	cytosol, mitochondrion, plastid	49.59	8.11
CDY47633	Canola	nucleus	33.33	7.92
CDY57317	Canola	nucleus	32.52	7.3
CDX91723	Canola	nucleus	30.89	7.12
GSMUA_Achr9P08220_001	Banana	mitochondrion	48.78	5.59
CDX82287	Canola	endoplasmic reticulum	28.46	5.56
CDY22966	Canola	endoplasmic reticulum	28.46	5.56
CDY60513	Canola	plastid	24.39	5.54
CDY64935	Canola	mitochondrion	29.27	5.5
CDY42075	Canola	plastid	24.39	5.48
CDY43695	Canola	mitochondrion	29.27	5.42
CDY01127	Canola	mitochondrion	24.39	4.76
KXG28276	Sorghum	plastid	8.13	2.03
TraesCS4B01G084100.1	Wheat	nucleus, plastid	5.69	1.51
TraesCS4D01G082000.1	Wheat	nucleus, plastid	5.69	1.5
HORVU4Hr1G014370.1	Barley	nucleus, plastid	4.88	1.29
TraesCS4A01G231900.1	Wheat	nucleus, plastid	4.07	1.12
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY08643	EnsemblPlantsGene:GSBRNA2T00000467001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF4	PFAM:PF06075
ProteinID:CDY08643	ProteinID:CDY08643.1	UniParc:UPI0004EF1AE0	UniProt:A0A078FA15	MapMan:20.1.5.4.2	:

Description

BnaC04g19520DBnaC04g19520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA15]

Coordinates

chrLK031987:+:375160..375648

Molecular Weight (calculated)

13838.3 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.547

Length

123 amino acids

Sequence
(BLAST)

001: MKIGYVRRES SELRQRTTIG YVRRESGELR PWRSPQAHEH RRQIAGEHMS SLLQVVSIVP ALAGGELFPN QGFYLKVSDS SHATYVSLPD EHDDLILSDK
101: LHTKSIPNSP TSCYSLPTSF ANT

Best Arabidopsis Sequence Match ( AT1G08760.1 )
(BLAST)

001: MANLVPGVLL KLLQHMNTDV KIAGEHRSSL LQVISIVPAL AGGELFPNQG FYLKVSDSSH ATYVSLPDEH DDLILSDKIQ LGQYIHVDRV ESSSPVPILR
101: GVRPVPGRHP CVGDPEDIVA THSLGFLSDD KVKNDNNGGV SSKPKERVKA SVKANGSGSD GERIIGNRLS VSISRDDSSD GKKPVSALFR AKSAKSSLSL
201: DVKKESLGKL KTSSGSKSIP SSPTSCYSLP NSFAKFANGI KQQQTVKPKL LEKGSPRMGL SEKGRSLLKA ESPKVGKKLP MIKNFVQGIE FGAKALRKSW
301: EGNLDIRGSD RTKSSLPRRD LTPDSRSLAA PRRSTSSEKL PSKQERANVF ARSSKEHNKI QSTKKVEPTA VLDTKDKTSR PKSTSVEKKS VAENGLPGNL
401: VKVSVNGKRL AAANIQWSSL PPSLSRMGQE VLRHREAAQV VAIEALQEAS ASESLLQCLI MYSDLLSTAK EDDPLPVVEQ FLKLHSGLKN VQVITESLSK
501: LLSLMSSPDN EENRSEEAIK AASEKQKLAA SWVQAALVTN LSPFSVYSSK QAKLAASRSK PVIILESPGN NSSSKTRGNI QNKPTIGSKL VAQGMIRKHR
601: ENSSSQKATS VAGSESPPLN WVKGNGLNEA TDLAEKLQMV SQDWFLGFVE RFLDADVITS SSLSLSDNGQ IAGMLSQLKS VNDWLDEIGS KEDEEGLQEV
701: SKETIDRLRK KIYEYLLTHV ESAAAALGGG GGSVSSPRPK PIETKAKR

Arabidopsis Description

At1g08760 [Source:UniProtKB/TrEMBL;Acc:Q9FRR2]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.