CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42075	Canola	plastid	89.67	88.85
AT2G31920.1	Thale cress	plastid	76.75	71.11
VIT_13s0320g00010.t01	Wine grape	cytosol	39.48	37.81
KRH43579	Soybean	plastid	37.08	35.33
KRH13842	Soybean	plastid	36.35	34.93
Solyc01g081640.2.1	Tomato	cytosol	37.64	32.54
PGSC0003DMT400079932	Potato	cytosol	35.06	31.77
CDY05811	Canola	cytosol	6.83	28.68
CDX91320	Canola	extracellular	5.17	28.0
CDY08643	Canola	mitochondrion, nucleus	5.54	24.39
CDY22665	Canola	extracellular, nucleus, peroxisome	26.75	23.09
CDY06329	Canola	extracellular, nucleus, peroxisome	26.57	23.04
CDY52268	Canola	mitochondrion	20.66	22.09
CDX97548	Canola	mitochondrion	20.48	21.89
CDX93540	Canola	extracellular, nucleus, vacuole	29.7	21.88
CDX95036	Canola	extracellular, nucleus, vacuole	29.15	21.5
CDY43695	Canola	mitochondrion	24.72	20.18
CDY64935	Canola	mitochondrion	24.17	20.03
CDY01127	Canola	mitochondrion	23.06	19.84
CDY47633	Canola	nucleus	18.82	19.69
CDY61547	Canola	nucleus	18.45	19.61
CDX91723	Canola	nucleus	19.0	19.29
CDX82287	Canola	endoplasmic reticulum	21.77	18.76
CDY69908	Canola	plastid	4.06	18.64
CDY22966	Canola	endoplasmic reticulum	21.59	18.57
CDY57317	Canola	nucleus	18.63	18.43
CDY69222	Canola	mitochondrion, plastid	14.02	17.92

Protein Annotations

EnsemblPlants:CDY60513	EnsemblPlantsGene:GSBRNA2T00029718001	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF7	PFAM:PF06075
ProteinID:CDY60513	ProteinID:CDY60513.1	SEG:seg	UniParc:UPI0004EC1657	UniProt:A0A078J9B3	MapMan:20.1.5.4.2

Description

BnaC04g54240DBnaC04g54240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9B3]

Coordinates

chrLK033888:+:34279..36530

Molecular Weight (calculated)

60096.2 Da

IEP (calculated)

10.355

GRAVY (calculated)

-0.380

Length

542 amino acids

Sequence
(BLAST)

001: MASLTPGVLS NLLELAAGKV ISSSSSPLLS SHRFPLLQVI EIVPCLSDNQ WRSERFFVKV SDSLHAAYVA VSAADDADLI RSDEIQLGQF VYIRGGLHVE
101: KGCPVPVVRG LKPVPKRRTC VGNPSDLVSS DLLLDFTPVS VDSIKKKRNL GDTRRLSLDS ARRSCWDHTS PPVTRRRDAA LLLSSSPRLK PKLVLSDKNL
201: PKNESPSKHL NCETPTLRNR NVVKPASPIS IAKSPKDGIK PLSKAVTPPV AYHKLPSSHR TWSDQRISWT GLPKTIQSLG KEVSSHRLVA VKAAVKALEE
301: ASAMESVLLS LQSFAELCDS SKRLSAGQVV RRFLDIYHST QNTGKAVHML LTHNGSCRSA AKKNAAAWVQ DAVVTGFSQF NLFKEPGIQE DAASSQDHHH
401: YIIIQSSSEK LSSKENTTSP RNQAYKGVKL PSRKHRSDSE RCSLEGKNRL KESLSLAEEL LRVSSQWFFK YLENSLKKGT FFVKKEEATG KESLLVSLKA
501: VNCWLDDLIR NRCEASEKVE ELRKKLQRFL LKHMESAIGK TM

Best Arabidopsis Sequence Match ( AT2G31920.1 )
(BLAST)

001: MASLTPGVLS NLLNIAAGNS PSSPPLLSSH RSPLLQVIEI VPCLSDDQWR SEAFFVKVSD SLHAAYVAVS TGDDADLIRS DEIQLGQFIY ICGGLHVEKG
101: CPVPVIRGLK PVPKRRMCVG NPSDLYSSDL LLPFTQVSVS PTTTKKKNLV ETRRLSLDSA RRSCWDQTPP VTRRRDAALL LSSPRLKSKL VLNDKSLLKI
201: ESPSKYFNCG TSPALRNKNV VKPGSPISMA SSPKDGIKSP ISKHLNCETP ALRSRYVVKP ASPISVTRSP KDGIKSLSKA VTPPVALFKV PSSHMTWSDQ
301: RMSWSGLPKT IQLLGKEVSS HRQVAVSAAV SALEEASAME SVLFSLQAFA ELCDSTKKLS TGQVVARFLD IYHNTQNTCK AVHRLLTQNR NNGSCRLVVN
401: KNATSWVQAA VVTGFSQFNL FKEPGKKGDA ADHHYIVMQN SSEKLNPKET TSSRTPSYKG AKPPATKHCS VSDRSSLEGK SSLKDSTSLA DELVQVSSQW
501: FLKYLENSLN KGSFLVKTEE TNGKESLLVH LKALNHWLDD LNLNRTETNE KVEDLRKKLQ RFLLEHIESV IGDTYNMKRK IINSI

Arabidopsis Description

Elongation factor 1-delta, putative (DUF936) [Source:UniProtKB/TrEMBL;Acc:Q9SKA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.