Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g081640.2.1 | Tomato | cytosol | 93.65 | 89.31 |
| VIT_13s0320g00010.t01 | Wine grape | cytosol | 50.17 | 53.0 |
| KRH43579 | Soybean | plastid | 38.8 | 40.77 |
| KRH13842 | Soybean | plastid | 37.12 | 39.36 |
| CDY60513 | Canola | plastid | 31.77 | 35.06 |
| AT2G31920.1 | Thale cress | plastid | 33.11 | 33.85 |
| Bra005615.1-P | Field mustard | plastid | 30.94 | 33.82 |
| CDY42075 | Canola | plastid | 30.94 | 33.82 |
| PGSC0003DMT400074262 | Potato | cytosol | 22.41 | 25.77 |
| PGSC0003DMT400058976 | Potato | mitochondrion | 22.07 | 25.48 |
| PGSC0003DMT400079598 | Potato | mitochondrion | 21.07 | 21.14 |
| PGSC0003DMT400008388 | Potato | cytosol | 21.91 | 20.0 |
| PGSC0003DMT400066158 | Potato | nucleus | 21.24 | 19.45 |
| PGSC0003DMT400001026 | Potato | mitochondrion | 20.9 | 18.17 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400079932 | EnsemblPlantsGene:PGSC0003DMG400031129 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008017 |
| InterPro:DUF936_pln | PANTHER:PTHR31928 | PANTHER:PTHR31928:SF7 | PFAM:PF06075 | PGSC:PGSC0003DMG400031129 | SEG:seg |
| UniParc:UPI00029545A8 | UniProt:M1D2R1 | MapMan:20.1.5.4.2 | : | : | : |
Description
Legume lectin, beta domain [Source:PGSC_GENE;Acc:PGSC0003DMG400031129]
Coordinates
chr1:+:67108734..67112137
Molecular Weight (calculated)
65980.7 Da
IEP (calculated)
10.247
GRAVY (calculated)
-0.540
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFQVISIVP SLDDDPWKSR GFYLRVSDSQ HSAYVSVSEQ DVELILSDKI QLGQFIHVTR LDSGSPVPVL RGVKPVPNRR PCVGDPKDLI SSDFLTARNR
101: PDPKRGKKNG EVKRVEAKTK INRVVLSEDV KSRRQSIGNG KVDGLEMRRL SLDSVRRGWD RSPGEKNGAG ATTPRSKSKT GFPGSDSLPS VKKPSLDKVS
201: TPRHSTASIS PLTSRNNIVS PRSVSKPTRK DVELIVSPRS VSKPSRKNLE LIVSPRAVSK PARKDVELSQ DETLPCNLTK VALSFKNWSD SRISWSSLPS
301: TVRDLGKEVT SLRNVAFLSA MHALEEAAAA EGIIQCMSMF AELCESSKKV PAGQLVEQFL NLHQNMQKAA SLTKSLVTRT PEAKGNDKFC LQNAFPEICH
401: NVTNKNTASW IQAAIDSDLS KFCLFIKEDK KGNLDSEKSH YIILENTPKI SEAENHSPII KQSTKTNGPS GPDSSGRRSV SKPKQHLPAT RRTTIEREEW
501: SKGSGLKEAA NLAEKLLSSS RAWFLNFLED ALSKGFGLDA VDGNSEIVDL LGQLKSVNQW LDDMLKLGNR IDERVEGLKQ KLYRFLLDHV DSSILGGK
101: PDPKRGKKNG EVKRVEAKTK INRVVLSEDV KSRRQSIGNG KVDGLEMRRL SLDSVRRGWD RSPGEKNGAG ATTPRSKSKT GFPGSDSLPS VKKPSLDKVS
201: TPRHSTASIS PLTSRNNIVS PRSVSKPTRK DVELIVSPRS VSKPSRKNLE LIVSPRAVSK PARKDVELSQ DETLPCNLTK VALSFKNWSD SRISWSSLPS
301: TVRDLGKEVT SLRNVAFLSA MHALEEAAAA EGIIQCMSMF AELCESSKKV PAGQLVEQFL NLHQNMQKAA SLTKSLVTRT PEAKGNDKFC LQNAFPEICH
401: NVTNKNTASW IQAAIDSDLS KFCLFIKEDK KGNLDSEKSH YIILENTPKI SEAENHSPII KQSTKTNGPS GPDSSGRRSV SKPKQHLPAT RRTTIEREEW
501: SKGSGLKEAA NLAEKLLSSS RAWFLNFLED ALSKGFGLDA VDGNSEIVDL LGQLKSVNQW LDDMLKLGNR IDERVEGLKQ KLYRFLLDHV DSSILGGK
001: MASLTPGVLS NLLNIAAGNS PSSPPLLSSH RSPLLQVIEI VPCLSDDQWR SEAFFVKVSD SLHAAYVAVS TGDDADLIRS DEIQLGQFIY ICGGLHVEKG
101: CPVPVIRGLK PVPKRRMCVG NPSDLYSSDL LLPFTQVSVS PTTTKKKNLV ETRRLSLDSA RRSCWDQTPP VTRRRDAALL LSSPRLKSKL VLNDKSLLKI
201: ESPSKYFNCG TSPALRNKNV VKPGSPISMA SSPKDGIKSP ISKHLNCETP ALRSRYVVKP ASPISVTRSP KDGIKSLSKA VTPPVALFKV PSSHMTWSDQ
301: RMSWSGLPKT IQLLGKEVSS HRQVAVSAAV SALEEASAME SVLFSLQAFA ELCDSTKKLS TGQVVARFLD IYHNTQNTCK AVHRLLTQNR NNGSCRLVVN
401: KNATSWVQAA VVTGFSQFNL FKEPGKKGDA ADHHYIVMQN SSEKLNPKET TSSRTPSYKG AKPPATKHCS VSDRSSLEGK SSLKDSTSLA DELVQVSSQW
501: FLKYLENSLN KGSFLVKTEE TNGKESLLVH LKALNHWLDD LNLNRTETNE KVEDLRKKLQ RFLLEHIESV IGDTYNMKRK IINSI
101: CPVPVIRGLK PVPKRRMCVG NPSDLYSSDL LLPFTQVSVS PTTTKKKNLV ETRRLSLDSA RRSCWDQTPP VTRRRDAALL LSSPRLKSKL VLNDKSLLKI
201: ESPSKYFNCG TSPALRNKNV VKPGSPISMA SSPKDGIKSP ISKHLNCETP ALRSRYVVKP ASPISVTRSP KDGIKSLSKA VTPPVALFKV PSSHMTWSDQ
301: RMSWSGLPKT IQLLGKEVSS HRQVAVSAAV SALEEASAME SVLFSLQAFA ELCDSTKKLS TGQVVARFLD IYHNTQNTCK AVHRLLTQNR NNGSCRLVVN
401: KNATSWVQAA VVTGFSQFNL FKEPGKKGDA ADHHYIVMQN SSEKLNPKET TSSRTPSYKG AKPPATKHCS VSDRSSLEGK SSLKDSTSLA DELVQVSSQW
501: FLKYLENSLN KGSFLVKTEE TNGKESLLVH LKALNHWLDD LNLNRTETNE KVEDLRKKLQ RFLLEHIESV IGDTYNMKRK IINSI
Arabidopsis Description
Elongation factor 1-delta, putative (DUF936) [Source:UniProtKB/TrEMBL;Acc:Q9SKA8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.