Factsheet for PGSC0003DMT400058976

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g122080.2.1	Tomato	mitochondrion	96.14	96.14
PGSC0003DMT400074262	Potato	cytosol	69.31	69.04
VIT_09s0002g00760.t01	Wine grape	mitochondrion	56.76	55.58
Zm00001d032126_P001	Maize	cytosol	22.01	48.72
KRH69022	Soybean	golgi, mitochondrion	50.58	48.34
AT3G14170.2	Thale cress	cytosol, golgi, mitochondrion, nucleus	46.33	47.43
CDY52268	Canola	mitochondrion	46.33	47.34
CDX97548	Canola	mitochondrion	45.56	46.55
KRH47653	Soybean	endoplasmic reticulum, nucleus, peroxisome	48.07	46.54
KRH06232	Soybean	nucleus	47.88	46.44
Bra027368.1-P	Field mustard	mitochondrion	45.17	46.15
Zm00001d038770_P001	Maize	cytosol	22.2	46.0
Zm00001d027907_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome	29.54	41.92
GSMUA_Achr1P21840_001	Banana	extracellular	42.08	40.75
Zm00001d017634_P001	Maize	cytosol	19.5	40.56
Os03t0181800-01	Rice	cytosol	43.63	39.44
EER95393	Sorghum	cytosol	42.66	39.05
TraesCS4A01G006800.1	Wheat	cytosol	42.08	36.95
TraesCS4D01G297000.1	Wheat	cytosol	42.08	36.95
TraesCS4B01G298200.1	Wheat	cytosol	41.89	36.78
HORVU4Hr1G077070.1	Barley	cytosol	41.89	36.78
Zm00001d012110_P001	Maize	nucleus	13.51	28.34
PGSC0003DMT400079598	Potato	mitochondrion	26.25	22.82
PGSC0003DMT400079932	Potato	cytosol	25.48	22.07
PGSC0003DMT400001026	Potato	mitochondrion	27.8	20.93
PGSC0003DMT400008388	Potato	cytosol	25.48	20.15
PGSC0003DMT400066158	Potato	nucleus	24.32	19.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400058976	EnsemblPlantsGene:PGSC0003DMG400022904	EntrezGene:102603463	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF2
PFAM:PF06075	PGSC:PGSC0003DMG400022904	RefSeq:XP_006342941.1	RefSeq:XP_015162222.1	SEG:seg	UniParc:UPI000294F7DF
UniProt:M1C3L5	MapMan:20.1.5.4.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022904]

Coordinates

chr3:+:61273445..61276502

Molecular Weight (calculated)

57338.2 Da

IEP (calculated)

9.885

GRAVY (calculated)

-0.378

Length

518 amino acids

Sequence
(BLAST)

001: MAALVPGVLI KLLQSMHSNK KVRGEYRSIL LQVISIVPAL NGSELWPNHG FFVKVSDSSH STYVTLSKEE NELILNNKLQ LGQLFYVERM EPGTPVPVLV
101: GVRPLPGRHP FVGNPKDLMQ MLEPSEVTVR NAQEDVNGSK LNESPELNKA DTKNKFVIKE QKTVVASRYM RGVLTSNTKI GGLDQGTGVK GIENESSGAA
201: KKAVPLKEKQ CELKGQTRSS TPFRSQSDAF VINSGINKHM KTPIFSTLKL TTSKQESIRE NSQSSEAYMP WSSLPTNLAK PGKGILRRGL LASLVAAEAQ
301: EEAKEAAKLL HCLRMFAELC TSASPECPHI SLSKFFTLNN LIELPSTVKT KELTPDNFAT KLSVHEKVKE GKMTCFLNGK ATSKSLKPSV ELSGAEKLEW
401: AKGDGSKDIV ELRELLLNEI QSWFLKFLEG ALEVGFWQNK QEQKTKVSVP RQTESKNQIA FTLSQLKHAN EWLDKVRSTL CSDKNNVADR VDRLKQKLYT
501: CLLLYLDSAA SALGKPTS

Best Arabidopsis Sequence Match ( AT3G14170.1 )
(BLAST)

001: MASLTPRVLI KLLETMNTNI KVRGEYRSVL LQVISIVPAL AGSELWPNQG FFIKVSDSSH STYVSLSNED NELILNNKLG IGQFFYVDKL DAGTPVPVLV
101: GVRPISGRHP FVGNPKDLMQ MLVPSETTPR EEEYHNQKKK DGARSNIVEN IRKHQPFVIK EEKTGVASRY MKGISNSKAS GSDSSSGGSN NEGETGSIMV
201: AKKVGVLAKG KQREHKDQAR QAGPLQCRPA TAPTKAEPKK LSLSSTVNYI NRKSNSAEDA SWSSLPVSLS KLGKGMLRRR NLAALIAAEV QREALAASHL
301: IKCISMFAEL SSNASPKNPH TSLRNFFTLQ SILDQVQVTV VASKDKSFQP VNIHSLWMEP EKLSKKASLS SSRATMKPSK ALTEAEKLEW VKGNGTEEIK
401: ELTNTLKRET RSWFLKFLED ALDTGLHATV PEKKGKTKGA RLAEPDNHIA ETLSQLKQAN EWLEKVKNDN LSSDNSLLEN IERLKKKIYS CLLLYVDSAA
501: SAIGV

Arabidopsis Description

Plant protein of unknown function (DUF936) [Source:TAIR;Acc:AT3G14170]
SUBAcon: [mitochondrion,golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.