CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027907_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome	60.42	93.7
Zm00001d038770_P001	Maize	cytosol	39.4	89.2
Zm00001d012110_P001	Maize	nucleus	38.87	89.07
Zm00001d017634_P001	Maize	cytosol	38.69	87.95
Zm00001d032126_P001	Maize	cytosol	35.69	86.32
Os03t0181800-01	Rice	cytosol	81.63	80.63
TraesCS4A01G006800.1	Wheat	cytosol	79.51	76.27
TraesCS4D01G297000.1	Wheat	cytosol	79.33	76.1
TraesCS4B01G298200.1	Wheat	cytosol	78.98	75.76
HORVU4Hr1G077070.1	Barley	cytosol	78.8	75.59
KRG89920	Soybean	extracellular, mitochondrion	20.14	61.62
GSMUA_Achr1P21840_001	Banana	extracellular	47.0	49.72
VIT_09s0002g00760.t01	Wine grape	mitochondrion	41.7	44.61
AT3G14170.2	Thale cress	cytosol, golgi, mitochondrion, nucleus	38.87	43.48
CDY52268	Canola	mitochondrion	38.69	43.2
CDX97548	Canola	mitochondrion	38.52	43.0
PGSC0003DMT400058976	Potato	mitochondrion	39.05	42.66
Bra027368.1-P	Field mustard	mitochondrion	38.16	42.6
Solyc03g122080.2.1	Tomato	mitochondrion	38.87	42.47
KRH47653	Soybean	endoplasmic reticulum, nucleus, peroxisome	39.75	42.06
PGSC0003DMT400074262	Potato	cytosol	38.52	41.92
KRH69022	Soybean	golgi, mitochondrion	39.22	40.96
Solyc12g049500.1.1	Tomato	cytosol	36.75	40.94
KRH06232	Soybean	nucleus	38.16	40.45
EES14150	Sorghum	cytosol, plasma membrane, plastid	30.39	23.15
EER99187	Sorghum	cytosol, mitochondrion, nucleus	29.86	22.75
EES02630	Sorghum	cytosol, extracellular, mitochondrion, nucleus	19.96	19.79
KXG36592	Sorghum	plastid	22.61	19.39
OQU86510	Sorghum	cytosol	15.9	18.4
KXG28276	Sorghum	plastid	15.19	17.44
EES09151	Sorghum	cytosol, mitochondrion, plastid	22.26	17.4

Protein Annotations

EnsemblPlants:EER95393	EnsemblPlantsGene:SORBI_3001G482100	EntrezGene:8057672	InterPro:DUF936_pln	ncoils:Coil	PANTHER:PTHR31928
PANTHER:PTHR31928:SF2	PFAM:PF06075	ProteinID:EER95393	ProteinID:EER95393.1	RefSeq:XP_002468395.1	SEG:seg
UniParc:UPI0001A82E8D	UniProt:C5WVS2	MapMan:20.1.5.4.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:75382487..75387040

Molecular Weight (calculated)

61907.5 Da

IEP (calculated)

10.292

GRAVY (calculated)

-0.623

Length

566 amino acids

Sequence
(BLAST)

001: MASLTPGILL KVLKNINSDV KVCGEYRSIL LQVISIVPAI TGSELWPDHG FFIKVSDSSH STYVSLSKED NELILSNKLQ LGQFIYVEKV QSSIPVPVLV
101: GVRPVPGRNP CIGNPKDLMQ MSTPSGVMEA LDHQRKTSKS ADLSESEKEN LQRKVVIKEQ KTVVASRYML GVSSNNGKIT NLNSSIDSDK SNGGSTISES
201: NQKSVAPKVR QEAKPQERPN NTSPSNAKLV STKQEISKDT RKNSGTSPSP NGSAVVKKQM PKEGKKESAT ERKSPPKLYR SSPMPARTSP TKLNSPAKQT
301: GNTGPVPSAA TVKRRVTETI SWDSLPTSLI KSGKAVVRRK NIALIVAAEA QREAAAAAYL VKGLGIFAEI RESSEVDPHA AITKFFQLHR LIIQQSAVWK
401: AYSPEPSKES RPEKEKPSRK ASASHQNKAG NTAKNPEDAQ GSEKTEWARE DGFKEICRSW IALKKESRSW FLRFLEDALE SGFMFESQTK NTRERVRGQP
501: KGGGDGRIAV RLSQLKETSN WLDQLQDEAA DSSADGLAET VEQLKQKVYK CLLGTVETAA SALEGR

Best Arabidopsis Sequence Match ( AT3G14170.2 )
(BLAST)

001: MASLTPRVLI KLLETMNTNI KVRGEYRSVL LQVISIVPAL AGSELWPNQG FFIKVSDSSH STYVSLSNED NELILNNKLG IGQFFYVDKL DAGTPVPVLV
101: GVRPISGRHP FVGNPKDLMQ MLVPSETTPR EEEYHNQKKQ KDGARSNIVE NIRKHQPFVI KEEKTGVASR YMKGISNSKA SGSDSSSGGS NNEGETGSIM
201: VAKKVGVLAK GKQREHKDQA RQAGPLQCRP ATAPTKAEPK KLSLSSTVNY INRKSNSAED ASWSSLPVSL SKLGKGMLRR RNLAALIAAE VQREALAASH
301: LIKCISMFAE LSSNASPKNP HTSLRNFFTL QSILDQVQVT VVASKDKSFQ PVNIHSLWME PEKLSKKASL SSSRATMKPS KALTEAEKLE WVKGNGTEEI
401: KELTNTLKRE TRSWFLKFLE DALDTGLHAT VPEKKGKTKG ARLAEPDNHI AETLSQLKQA NEWLEKVKND NLSSDNSLLE NIERLKKKIY SCLLLYVDSA
501: ASAIGV

Arabidopsis Description

Plant protein of unknown function (DUF936) [Source:TAIR;Acc:AT3G14170]
SUBAcon: [mitochondrion,golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.