Factsheet for Bra024618.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61547	Canola	nucleus	95.54	96.67
Bra016331.1-P	Field mustard	nucleus	83.53	80.41
AT1G23790.1	Thale cress	nucleus	79.65	79.34
KRH69557	Soybean	extracellular, mitochondrion, nucleus, vacuole	56.59	50.96
KRH74610	Soybean	cytosol, extracellular, mitochondrion, nucleus	56.78	49.83
VIT_01s0026g00030.t01	Wine grape	mitochondrion	56.98	49.66
Os01t0108800-01	Rice	cytosol	21.71	48.48
PGSC0003DMT400079598	Potato	mitochondrion	55.81	48.32
Solyc05g005580.2.1	Tomato	mitochondrion	55.23	47.82
GSMUA_Achr8P14440_001	Banana	mitochondrion	44.38	44.55
TraesCS3A01G000300.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	42.64	40.97
TraesCS3D01G008800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	42.64	40.15
TraesCS3B01G003800.1	Wheat	cytosol, extracellular, mitochondrion, nucleus	42.44	40.04
GSMUA_Achr9P00810_001	Banana	cytosol, mitochondrion, nucleus	43.6	39.89
EES02630	Sorghum	cytosol, extracellular, mitochondrion, nucleus	40.89	36.95
HORVU3Hr1G000140.4	Barley	plastid	42.83	35.3
Zm00001d040147_P001	Maize	nucleus	41.09	35.22
OQU86510	Sorghum	cytosol	32.36	34.15
Bra031640.1-P	Field mustard	cytosol, nucleus, peroxisome	29.65	22.11
Bra027368.1-P	Field mustard	mitochondrion	21.71	22.09
Bra018603.1-P	Field mustard	cytosol, nucleus, vacuole	30.04	21.06
Bra032701.1-P	Field mustard	mitochondrion	23.64	19.37
Bra034878.1-P	Field mustard	mitochondrion	24.42	19.3
Bra005615.1-P	Field mustard	plastid	19.57	18.46
Bra001755.1-P	Field mustard	nucleus	21.12	18.23

Protein Annotations

EnsemblPlants:Bra024618.1	EnsemblPlants:Bra024618.1-P	EnsemblPlantsGene:Bra024618	InterPro:DUF936_pln	PANTHER:PTHR31928	PANTHER:PTHR31928:SF20
PFAM:PF06075	SEG:seg	UniParc:UPI0002542975	UniProt:M4E763	MapMan:20.1.5.4.2	:

Description

AT1G23790 (E=3e-176) | unknown protein

Coordinates

chrA09:-:24002161..24004013

Molecular Weight (calculated)

56359.6 Da

IEP (calculated)

10.379

GRAVY (calculated)

-0.572

Length

516 amino acids

Sequence
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTREHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVTDSS HSIYVSLPPD QDDVVLSNKL QLGQFIYVDR LEPGTPVPIV
101: QGARPIPGRH PLLGTPEPLM SCTRGGGKGE NERGRGSWDL NGDVLVLKPA SLDFDQCTPA KQRVVTRGRS PGGVRCSYGG GVLRGESPGS VMRKSCVVVP
201: SSSSKFPRSR SVCDRETVKS TVSSALFSPF KSSAKKSNSP PPSVRTRRAT AAAALVEDER DVPKSTSKLA SPKHSKLEKQ EKSSSLTGRL STLSKEAMQQ
301: RETAQKIALQ ALREATVTET VVRHLKTLAN ISKSAKADCP AACFEKFLEF HKQISETMTE IASIEAANVN KSEDGSSSIL NEIQHNSIDQ EKTASKRRTT
401: ALKQQQNHKK LRSNDENKNP SAAPPPSGLG NSVKLAREIE NEAANWFMEF IEKALERGMK KCKGACDADV KKVPQPLIIQ VVNWVEAEQS ADNTRRPVHP
501: KASQITRKLR IKMKNP

Best Arabidopsis Sequence Match ( AT1G23790.1 )
(BLAST)

001: MAALAPGILQ KLIDGMKTGV KPTGEHRSSL LQVTDIVPID LDEKNLLPKQ GFFIKVSDSS HSIYVSLPSD QDDDVLSNKM QLGQFIYVDR LDPGTPVPII
101: KGARPIPGRH PLLGTPEPLM STRGKIESSR PRRGSWGQNG DVSSPFVLKP APLDFDQCTP AKHRLGTGRF MAASPNVMTR GRSPGGVRCS YGGGLLSKMA
201: ESPAAMMRKS CVVPPSSKFP RSKSVCDRET MAKNSVLFSP FKSSAKKNDS PPPSVRTRRA TAASLLEDER EAPKSTSKYS KLEKPEKSLS LPGRLSTLSK
301: EAMQQRETAQ KIALQALREA TTTETVVRHL KTFANLSKSA KADCPAACFD KFLEFHSQIS ETMNEIASIE AAASPATTEK KSEDGSLILH EIQHNSIDQE
401: KTTSKRRILL KQQQKRSNDE NKNPAVSLSG LGNTARLVKE IEKEAANWFM EFIEKALEKG MKKCKGTSDA DVKKVPQSLI LKVVNWVEEE HSADNTKRPV
501: HPKASHITRK LRIKLKNP

Arabidopsis Description

At1g23790 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.