Factsheet for VIT_04s0043g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000227_P001	Maize	cytosol	70.37	89.34
VIT_10s0003g03770.t01	Wine grape	plastid	85.19	88.24
Os03t0645100-01	Rice	plastid	71.11	88.07
KRH42550	Soybean	plastid	83.21	83.0
KRH15497	Soybean	plastid	80.49	80.49
Solyc08g016750.2.1	Tomato	plastid	80.74	80.15
Solyc04g008590.2.1	Tomato	plastid	80.49	79.9
KRH58644	Soybean	nucleus	79.26	79.26
KRH05520	Soybean	plastid	78.77	79.16
PGSC0003DMT400019358	Potato	plastid	80.99	78.66
TraesCS5D01G384100.1	Wheat	golgi	75.31	77.61
TraesCS5A01G374500.1	Wheat	plastid	75.06	77.35
TraesCS5B01G376400.1	Wheat	plastid	74.81	77.1
Zm00001d033225_P002	Maize	plastid	72.59	76.76
EER93752	Sorghum	plastid	73.33	76.74
GSMUA_Achr5P02560_001	Banana	plastid	69.63	76.01
EES16391	Sorghum	plastid	74.81	75.94
Os12t0616900-01	Rice	plastid	73.09	75.7
PGSC0003DMT400080554	Potato	plastid	81.48	75.69
TraesCS5A01G030800.1	Wheat	plastid	70.62	73.15
HORVU0Hr1G009910.2	Barley	plastid	70.62	72.59
GSMUA_Achr4P31470_001	Banana	mitochondrion	46.42	72.03
TraesCS5B01G030400.1	Wheat	plastid	69.63	71.76
GSMUA_Achr2P12960_001	Banana	vacuole	10.86	70.97
TraesCS5D01G039000.1	Wheat	plastid	69.63	69.63
HORVU5Hr1G092920.4	Barley	plastid	73.33	63.87
VIT_17s0000g00690.t01	Wine grape	mitochondrion	33.09	37.43
VIT_01s0146g00310.t01	Wine grape	mitochondrion	33.83	37.33
VIT_06s0004g00190.t01	Wine grape	mitochondrion	27.16	30.73
VIT_04s0008g02300.t01	Wine grape	mitochondrion	9.14	28.03

Protein Annotations

EntrezGene:100250049	wikigene:100250049	EntrezGene:100259931	wikigene:100259931	Gene3D:3.40.50.920	Gene3D:3.40.50.970
MapMan:5.1.2.2.1.2	ProteinID:CCB51874	ProteinID:CCB51874.1	UniProt:F6HI27	EMBL:FN595763	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	EntrezGene:LOC100250049	wikigene:LOC100250049
EntrezGene:LOC100259931	wikigene:LOC100259931	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95
SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	TIGR:TC57643	TIGR:TC66415	InterPro:THDP-binding
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI00015CA3B0	ArrayExpress:VIT_04s0043g00720	EnsemblPlantsGene:VIT_04s0043g00720
EnsemblPlants:VIT_04s0043g00720.t01	unigene:Vvi.1484	RefSeq:XP_002269441	RefSeq:XP_002269441.1	RefSeq:XP_003633031	RefSeq:XP_003633031.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:14706705..14709979

Molecular Weight (calculated)

43929.1 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.044

Length

405 amino acids

Sequence
(BLAST)

001: MAAIFQGIGA AAAAAALPPA EKFHSQSPRF VSARKGSLFV VRSDGRPSLG SSPRSRGAQR LITNAVAAKA DASVTSTASK PGHELLLFEA LREGLEEEMD
101: RDPRVCVMGE DVGHYGGSYK VTKGLATKYG DLRVLDTPIA ENSFTGMGIG AAMTGLRPII EGMNMGFLLL AFNQISNNCG MLHYTSGGQF KIPVVIRGPG
201: GVGRQLGAEH SQRLESYFQS IPGIQMVACS TPYNAKGLMK AAIRSENPVI LFEHVLLYNL KERIPDEEYV LSLEEAEMVR PGEHVTILTY SRMRYHVMQA
301: AKTLVNKGYD PEVIDIRSLK PFDLYTIGNS VKKTHRVLIV EECMRTGGIG ASLTAAITEN FIDYLDAPIV CLSSQDVPTP YAGTLEEWTV VQPSQIVTAV
401: EQLCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.