Factsheet for HORVU0Hr1G009910.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G000140.4
HORVU4Hr1G006930.1
HORVU4Hr1G087520.3
HORVU5Hr1G060730.3
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1
HORVU7Hr1G052520.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	HORVU4Hr1G006930.1	AT1G14920.1	21798944
AT1G30120.1	HORVU3Hr1G000140.4	AT1G70340.1	21798944
AT1G30120.1	HORVU4Hr1G087520.3	AT3G17860.1	21798944
AT1G30120.1	HORVU5Hr1G060730.3	AT3G17860.1	21798944
AT1G30120.1	HORVU7Hr1G052520.1	AT3G21140.1	21798944
AT1G30120.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT1G30120.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G030400.1	Wheat	plastid	95.94	96.18
TraesCS5D01G039000.1	Wheat	plastid	95.43	92.84
Zm00001d000227_P001	Maize	cytosol	75.13	92.79
TraesCS5A01G030800.1	Wheat	plastid	90.86	91.56
CDX90227	Canola	cytosol, mitochondrion, peroxisome	42.13	89.25
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	66.5	85.34
EES16391	Sorghum	plastid	83.76	82.71
Os12t0616900-01	Rice	plastid	79.44	80.05
VIT_10s0003g03770.t01	Wine grape	plastid	72.33	72.89
KRH05520	Soybean	plastid	72.59	70.97
VIT_04s0043g00720.t01	Wine grape	plastid	72.59	70.62
CDY63670	Canola	plastid	72.08	70.47
Solyc04g008590.2.1	Tomato	plastid	72.84	70.34
AT2G34590.1	Thale cress	plastid	72.33	70.2
KRH42550	Soybean	plastid	72.33	70.2
KRH58644	Soybean	nucleus	72.08	70.12
Solyc08g016750.2.1	Tomato	plastid	72.59	70.1
KRH15497	Soybean	plastid	71.83	69.88
Bra010796.1-P	Field mustard	plastid	71.07	69.48
AT1G30120.1	Thale cress	plastid	71.57	69.46
CDY51472	Canola	plastid	64.21	69.32
GSMUA_Achr5P02560_001	Banana	plastid	64.97	69.0
PGSC0003DMT400019358	Potato	plastid	72.84	68.82
GSMUA_Achr4P31470_001	Banana	mitochondrion	45.18	68.2
CDY54115	Canola	mitochondrion, peroxisome, plastid	10.41	67.21
HORVU5Hr1G092920.4	Barley	plastid	78.68	66.67
GSMUA_Achr2P12960_001	Banana	vacuole	10.41	66.13
PGSC0003DMT400080554	Potato	plastid	71.32	64.45
CDY54117	Canola	cytosol	18.78	63.79
CDY26291	Canola	plastid	50.76	63.49
CDY54116	Canola	cytosol	4.06	40.0
HORVU6Hr1G017000.1	Barley	cytosol, mitochondrion	11.68	36.51
HORVU7Hr1G055090.3	Barley	mitochondrion	34.26	36.49
CDX90228	Canola	plastid	11.93	35.34
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	36.29	33.18
HORVU6Hr1G006560.2	Barley	mitochondrion	28.43	30.11
HORVU5Hr1G114960.1	Barley	cytosol	14.97	28.78
HORVU3Hr1G031230.1	Barley	mitochondrion, peroxisome, plastid	10.91	27.39
HORVU6Hr1G037690.1	Barley	plastid	10.15	23.81
HORVU1Hr1G025150.1	Barley	mitochondrion, nucleus, peroxisome	9.14	22.93

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	EMBL:AK356888	EMBL:AK362291	UniProt:F2CZ32
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:HORVU0Hr1G009910	EnsemblPlants:HORVU0Hr1G009910.2
InterPro:IPR009014	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF93	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
UniParc:UPI0002005590	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CZ32]

Coordinates

chrchrUn:-:57072033..57075144

Molecular Weight (calculated)

42274.1 Da

IEP (calculated)

6.402

GRAVY (calculated)

0.011

Length

394 amino acids

Sequence
(BLAST)

001: MAVAASPQAT AAAAALSRHR SAAVPPVSRS VRVAAAGRRP PGSSRARGGL VARAAVAAKA EAPSSSDSGG HEVLMFEALR EAMIEEMTLD PTVCIIGEDV
101: GDYGGSYKVS KGLSEMFGDL RVLDTPIAEN SFTGMGIGAA MKGLRPVVEG MNMGFLLLAY NQISNNCGML PYTSGGQFKI PIVIRGPGGV GRQLGAEHSQ
201: RLESYFQSIP GIQMVACSTP YNAKGLLKAA IRSDNPVVLF EHVLLYNLKE KIPDEEYICC LEEAEMVRPG SQLTILTYSR MRYHVMQAVK TLVNKGYDPE
301: VIDIRSLKPF DLHTIGNSIK KTHRVLIVEE CMRTGGIGAS LRSAIIDNFW DELDTRPVCL SSQDVPTPYA ATLEDATVVQ PAQIVAAVEE ICQS

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.