CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH39044
KRH42544
KRH44611
KRH47293
KRH54542
KRH56919
KRH58636
KRH63357
KRH69557
KRH74610

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	KRH42544	AT1G14920.1	21798944
AT1G30120.1	KRH58636	AT1G14920.1	21798944
AT1G30120.1	KRH69557	AT1G70340.1	21798944
AT1G30120.1	KRH74610	AT1G70340.1	21798944
AT1G30120.1	KRH39044	AT3G17860.1	21798944
AT1G30120.1	KRH44611	AT3G21140.1	21798944
AT1G30120.1	KRH47293	AT3G21140.1	21798944
AT1G30120.1	KRH03466	AT3G47620.1	21798944
AT1G30120.1	KRH54542	AT3G47620.1	21798944
AT1G30120.1	KRH56919	AT3G47620.1	21798944
AT1G30120.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	43.46	94.62
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	71.11	93.81
Zm00001d000227_P001	Maize	cytosol	71.11	90.28
Os03t0645100-01	Rice	plastid	72.59	89.91
KRH42550	Soybean	plastid	89.38	89.16
CDY54115	Canola	mitochondrion, peroxisome, plastid	13.09	86.89
KRH05520	Soybean	plastid	84.94	85.36
VIT_10s0003g03770.t01	Wine grape	plastid	79.75	82.61
KRH15497	Soybean	plastid	81.73	81.73
Solyc04g008590.2.1	Tomato	plastid	81.98	81.37
Solyc08g016750.2.1	Tomato	plastid	81.73	81.13
PGSC0003DMT400019358	Potato	plastid	81.98	79.62
VIT_04s0043g00720.t01	Wine grape	plastid	79.26	79.26
CDY63670	Canola	plastid	78.27	78.66
AT2G34590.1	Thale cress	plastid	78.27	78.08
TraesCS5D01G384100.1	Wheat	golgi	75.06	77.35
Zm00001d033225_P002	Maize	plastid	73.09	77.28
EER93752	Sorghum	plastid	73.83	77.26
Bra010796.1-P	Field mustard	plastid	76.79	77.17
TraesCS5A01G374500.1	Wheat	plastid	74.81	77.1
AT1G30120.1	Thale cress	plastid	77.28	77.09
TraesCS5B01G376400.1	Wheat	plastid	74.57	76.84
GSMUA_Achr5P02560_001	Banana	plastid	69.88	76.28
Os12t0616900-01	Rice	plastid	73.33	75.96
EES16391	Sorghum	plastid	74.32	75.44
CDY51472	Canola	plastid	67.9	75.34
TraesCS5A01G030800.1	Wheat	plastid	70.12	72.63
GSMUA_Achr2P12960_001	Banana	vacuole	11.11	72.58
TraesCS5B01G030400.1	Wheat	plastid	70.37	72.52
PGSC0003DMT400080554	Potato	plastid	78.02	72.48
HORVU0Hr1G009910.2	Barley	plastid	70.12	72.08
GSMUA_Achr4P31470_001	Banana	mitochondrion	46.42	72.03
CDY54117	Canola	cytosol	20.25	70.69
TraesCS5D01G039000.1	Wheat	plastid	70.62	70.62
CDY26291	Canola	plastid	53.58	68.89
HORVU5Hr1G092920.4	Barley	plastid	74.07	64.52
CDY54116	Canola	cytosol	4.44	45.0
CDX90228	Canola	plastid	14.07	42.86
KRH14338	Soybean	mitochondrion	36.05	40.56
KRH73802	Soybean	mitochondrion	36.05	40.56
KRH16935	Soybean	mitochondrion	35.31	39.72
KRH65916	Soybean	mitochondrion	28.4	32.12
KRH75712	Soybean	mitochondrion	26.42	30.06

Protein Annotations

EntrezGene:100780826	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	EMBL:AB552922	EMBL:ACUP02003280
UniProt:E5RPJ6	EnsemblPlantsGene:GLYMA_05G141000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0008150
GO:GO:0008152	InterPro:IPR009014	EnsemblPlants:KRH58644	ProteinID:KRH58644	ProteinID:KRH58644.1	PFAM:PF02779
PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0001BA5A3D	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:33438255..33441480

Molecular Weight (calculated)

44128.3 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.058

Length

405 amino acids

Sequence
(BLAST)

001: MATLFQGLGV VNPSLSSSNS NNFLLPSRTS LSERKDGIFV VRSDARVSSK VLKAGARKHE LLVTNAVATK EGSSAASTSK SGHELLLFEA LREGLEEEME
101: RDPCVCVMGE DVGHYGGSYK VTKGLATKFG DLRVLDTPIA ENSFTGMGIG AAMTGLRPVV EGMNMGFLLL AFNQISNNCG MLHYTSGGQF KIPIVIRGPG
201: GVGRQLGAEH SQRLESYFQS IPGIQMVACS TPYNAKGLMK AAIRSENPVI LFEHVLLYNL KERIPDEEYV LSLEEAEMVR PGEHVTILTY SRMRYHVMQA
301: AKTLVNKGYD PEVIDIRSLK PFDLHTIGNS VKKTHRVLIV EECMRTGGIG ASLTAAITEN FHDYLDAPIV CLSSQDVPTP YAGTLEEWTV VQPAQIVTAV
401: EQLCK

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.