Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
16595579
plastid: 18419817 unclear: 25769308 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G376400.1 | Wheat | plastid | 99.75 | 99.75 |
| TraesCS5D01G384100.1 | Wheat | golgi | 99.49 | 99.49 |
| Os03t0645100-01 | Rice | plastid | 79.9 | 96.02 |
| CDX90227 | Canola | cytosol, mitochondrion, peroxisome | 43.26 | 91.4 |
| Bra032361.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 69.47 | 88.93 |
| EER93752 | Sorghum | plastid | 87.02 | 88.37 |
| Zm00001d033225_P002 | Maize | plastid | 84.48 | 86.68 |
| TraesCS5A01G030800.1 | Wheat | plastid | 76.84 | 77.24 |
| VIT_10s0003g03770.t01 | Wine grape | plastid | 76.08 | 76.47 |
| KRH05520 | Soybean | plastid | 77.35 | 75.43 |
| CDY54115 | Canola | mitochondrion, peroxisome, plastid | 11.7 | 75.41 |
| VIT_04s0043g00720.t01 | Wine grape | plastid | 77.35 | 75.06 |
| KRH15497 | Soybean | plastid | 77.35 | 75.06 |
| KRH42550 | Soybean | plastid | 77.35 | 74.88 |
| KRH58644 | Soybean | nucleus | 77.1 | 74.81 |
| HORVU5Hr1G092920.4 | Barley | plastid | 88.04 | 74.41 |
| GSMUA_Achr5P02560_001 | Banana | plastid | 69.97 | 74.12 |
| Bra010796.1-P | Field mustard | plastid | 75.83 | 73.95 |
| CDY63670 | Canola | plastid | 75.32 | 73.45 |
| AT1G30120.1 | Thale cress | plastid | 75.57 | 73.15 |
| Solyc08g016750.2.1 | Tomato | plastid | 75.57 | 72.79 |
| Solyc04g008590.2.1 | Tomato | plastid | 75.57 | 72.79 |
| GSMUA_Achr2P12960_001 | Banana | vacuole | 11.45 | 72.58 |
| AT2G34590.1 | Thale cress | plastid | 74.3 | 71.92 |
| CDY51472 | Canola | plastid | 66.41 | 71.51 |
| PGSC0003DMT400019358 | Potato | plastid | 75.83 | 71.46 |
| GSMUA_Achr4P31470_001 | Banana | mitochondrion | 47.33 | 71.26 |
| PGSC0003DMT400080554 | Potato | plastid | 75.06 | 67.66 |
| CDY26291 | Canola | plastid | 53.44 | 66.67 |
| CDY54117 | Canola | cytosol | 19.08 | 64.66 |
| CDY54116 | Canola | cytosol | 4.58 | 45.0 |
| CDX90228 | Canola | plastid | 13.74 | 40.6 |
| TraesCS7A01G263300.1 | Wheat | plastid | 36.9 | 39.3 |
| TraesCS5A01G291500.1 | Wheat | golgi | 36.9 | 38.56 |
| TraesCS6A01G036000.1 | Wheat | mitochondrion | 29.26 | 31.08 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G374500.1 | EnsemblPlantsGene:TraesCS5A01G374500 | Gene3D:3.40.50.920 | Gene3D:3.40.50.970 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:IPR009014 | InterPro:THDP-binding | InterPro:Transketo_C/PFOR_II | InterPro:Transketolase-like_Pyr-bd |
| InterPro:Transketolase_C | PANTHER:PTHR11624 | PANTHER:PTHR11624:SF93 | PFAM:PF02779 | PFAM:PF02780 | SEG:seg |
| SMART:SM00861 | SUPFAM:SSF52518 | SUPFAM:SSF52922 | TIGR:cd07036 | MapMan:5.1.2.2.1.2 | : |
Description
No Description!
Coordinates
chr5A:+:572837706..572840953
Molecular Weight (calculated)
42100.9 Da
IEP (calculated)
6.581
GRAVY (calculated)
0.009
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASSLHVA APAATPRVGS AGPKSASAAR SVRVARSGAA ARHGGRLVAC AAVATKADAP ASEAASKSEG HEVLLFEALR EGLMEEMQAD PTVCVFGEDV
101: GHYGGSYKVT KGLADMFGDL RVLDTPIAEN SFTGMGVGAG MKGLRPVVEG MNMGFLLLAY NQISNNCGML HYTSGGQFKI PLVIRGPGGV GRQLGAEHSQ
201: RLESYFQSIP GLQMVACSTP YNAKGLMKAA IRSENPVVLF EHVLLYNLKE KIPDEEYTLC LEEAEMVRPG EHVTILTYSR MRYHVMQAAK TLVNKGYDPE
301: VIDIRSLKPF DLHTIGNSIK KTHRVLIVEE CMRTGGIGAS LRSAIIDNFW DYLDAPIMCL SSQDVPTPYA ATLEDATVVQ PAQIVAAVEQ ICQ
101: GHYGGSYKVT KGLADMFGDL RVLDTPIAEN SFTGMGVGAG MKGLRPVVEG MNMGFLLLAY NQISNNCGML HYTSGGQFKI PLVIRGPGGV GRQLGAEHSQ
201: RLESYFQSIP GLQMVACSTP YNAKGLMKAA IRSENPVVLF EHVLLYNLKE KIPDEEYTLC LEEAEMVRPG EHVTILTYSR MRYHVMQAAK TLVNKGYDPE
301: VIDIRSLKPF DLHTIGNSIK KTHRVLIVEE CMRTGGIGAS LRSAIIDNFW DYLDAPIMCL SSQDVPTPYA ATLEDATVVQ PAQIVAAVEQ ICQ
001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
Arabidopsis Description
PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.